XSB1101 : unnamed protein product [Mus musculus]
[ CaMP Format ]
This entry is computationally expanded from SB0037
* Basic Information
| Organism | Mus musculus (house mouse) |
| Protein Names | Putative uncharacterized protein |
| Gene Names | Vim |
| Gene Locus | Not available |
| GO Function | Not available |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 405 aa
Average Mass: 47.177 kDa
Monoisotopic Mass: 47.148 kDa
2. Domain Information
Annotated Domains: interpro / pfam / smart / prosite
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
|---|---|---|---|---|
| Filament_head 1. | 2 | 40 | 23.8 | 1.6e-05 |
| --- cleavage 30 (inside Filament_head 2..40) --- | ||||
| Filament 1. | 41 | 349 | 606.9 | 2e-179 |
| --- cleavage 203 (inside Filament 41..349) --- | ||||
3. Sequence Information
Fasta Sequence: XSB1101.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
2 [sites]
Cleavage sites (±10aa)
[Site 1] QIDVDVSKPD203-LTAALRDVRQ
Asp203 
Leu
 |
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Gln194 | Ile195 | Asp196 | Val197 | Asp198 | Val199 | Ser200 | Lys201 | Pro202 | Asp203 |
 |
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Leu204 | Thr205 | Ala206 | Ala207 | Leu208 | Arg209 | Asp210 | Val211 | Arg212 | Gln213 |
Sequence conservation (by blast)
Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| KKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSK |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | Mus musculus | 82.80 | 28 | unnamed protein product |
| 2 | N/A | 82.80 | 24 | V |
| 3 | Rattus norvegicus | 82.80 | 11 | vimentin |
| 4 | Cricetulus griseus | 82.80 | 1 | vimentin |
| 5 | Canis familiaris | 81.60 | 20 | PREDICTED: similar to Vimentin isoform 2 |
| 6 | Bos taurus | 81.60 | 8 | vimentin |
| 7 | Monodelphis domestica | 81.60 | 6 | PREDICTED: similar to vimentin |
| 8 | Gallus gallus | 81.60 | 4 | vimentin |
| 9 | Bubalus bubalis | 81.60 | 1 | vimentin |
| 10 | Sus scrofa domestica | 81.60 | 1 | vimentin |
| 11 | Homo sapiens | 81.30 | 46 | unnamed protein product |
| 12 | Macaca mulatta | 81.30 | 10 | PREDICTED: vimentin |
| 13 | Pan troglodytes | 81.30 | 8 | vimentin |
| 14 | Macaca fascicularis | 81.30 | 4 | unnamed protein product |
| 15 | synthetic construct | 81.30 | 3 | vimentin |
| 16 | Pan troglodytes verus | 81.30 | 1 | vimentin |
| 17 | Ovis aries | 80.10 | 2 | vimentin |
| 18 | Xenopus laevis | 77.40 | 15 | VIM1_XENLA Vimentin-1/2 emb |
| 19 | Daboia russellii | 77.40 | 1 | AF447708_1 vimentin |
| 20 | Xenopus tropicalis | 76.30 | 5 | Unknown (protein for IMAGE:7605834) |
| 21 | Bos grunniens | 76.30 | 1 | vimentin |
| 22 | Cyprinus carpio | 72.00 | 2 | VIME_CYPCA Vimentin gb |
| 23 | Danio rerio | 70.90 | 17 | vimentin |
| 24 | Sus scrofa | 69.30 | 3 | desmin |
| 25 | Canis lupus familiaris | 69.30 | 1 | desmin |
| 26 | Mesocricetus auratus | 69.30 | 1 | DESM_MESAU Desmin gb |
| 27 | Scyliorhinus stellaris | 68.90 | 1 | desmin |
| 28 | Oncorhynchus mykiss | 68.60 | 2 | VIME_ONCMY Vimentin emb |
| 29 | Acipenser baerii | 68.20 | 2 | vimentin |
| 30 | Takifugu rubripes | 68.20 | 1 | TPA: desmin |
| 31 | Tetraodon nigroviridis | 67.40 | 7 | unnamed protein product |
| 32 | Protopterus aethiopicus | 66.20 | 1 | type III desmin |
| 33 | Oreochromis mossambicus | 65.50 | 1 | glial fibrillary acidic protein |
| 34 | Lampetra fluviatilis | 63.90 | 2 | intermediate filament protein |
| 35 | Pongo pygmaeus | 62.80 | 5 | hypothetical protein |
| 36 | Dama dama | 62.00 | 1 | glial fibrillary acidic protein |
| 37 | Equus caballus | 62.00 | 1 | glial fibrillary acidic protein |
| 38 | Capreolus capreolus | 62.00 | 1 | glial fibrillary acidic protein |
Top-ranked sequences
| organism | matching |
|---|---|
| Mus musculus | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 174 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 |
| N/A | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 217 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 276 |
| Rattus norvegicus | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Cricetulus griseus | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 149 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 |
| Canis familiaris | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 229 KKLHDEEIQELQAQIQDQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 288 |
| Bos taurus | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Monodelphis domestica | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| ||||+|||#|||||||||||||||||||||||||||||| Sbjct 236 KKLHDEEIQELQAQIQEQHIQIDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 |
| Gallus gallus | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 229 KKLHDEEIRELQAQLQEQHIQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 288 |
| Bubalus bubalis | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 40 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 99 |
| Sus scrofa domestica | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 105 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 164 |
| Homo sapiens | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 214 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 273 |
| Macaca mulatta | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Pan troglodytes | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Macaca fascicularis | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| synthetic construct | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Pan troglodytes verus | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Ovis aries | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| |+|||+||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSQPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Xenopus laevis | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| |+||||||#|||||||||||||+|||||| +|||||||| Sbjct 228 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEEWYKSK 287 |
| Daboia russellii | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||+ |+||+|||#|||||||||||||||| ||||||||||||| Sbjct 230 KKLHEEEIRELQAQIQDQHIQIDMDVAKPD#LTAALRDVRQQYESVATKNLQEAEEWYKSK 289 |
| Xenopus tropicalis | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| |+||||||#|||||||||||||+|||||| +||+||||| Sbjct 254 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEDWYKSK 313 |
| Bos grunniens | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 230 ||||| |+||||||#||||||||||||||||||||||||||| Sbjct 48 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 104 |
| Cyprinus carpio | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| |++|+|||#|||||+|||||||++|++||||+||||||| Sbjct 226 KKLHDEELAELQIQIQEQHVQIDMEVAKPD#LTAALKDVRQQYETLASRNLQESEEWYKSK 285 |
| Danio rerio | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||||| |++|+|||#|||||+|||||||++|++||||+|+||||| Sbjct 226 KKLHDEELAEMQIQMQEQHLQIDMEVTKPD#LTAALKDVRQQYETLASRNLQESEDWYKSK 285 |
| Sus scrofa | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||+|+ ++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 232 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 291 |
| Canis lupus familiaris | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||+|+ ++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Mesocricetus auratus | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||+|+ ++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Scyliorhinus stellaris | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||+|+ ++|+||||#|||||||+| ||| ++|||+|||||||||| Sbjct 224 KKVHEEELRELQAQLQEQHVQVEMDLSKPD#LTAALRDIRAQYECISAKNVQEAEEWYKSK 283 |
| Oncorhynchus mykiss | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 +|||| |+||+|||#||||||||| |||++|++|||++|+||||| Sbjct 231 RKLHDEEVAELQAQIQDQHVQIDMDVAKPD#LTAALRDVRVQYETLASRNLQDSEDWYKSK 290 |
| Acipenser baerii | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 +|||| |+||+|||#||||||||| |||++|+||+ |+|+||||| Sbjct 225 RKLHDEELAELQVQIQEQHIQIDMDVAKPD#LTAALRDVRLQYENLASKNMSESEDWYKSK 284 |
| Takifugu rubripes | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||+|+ +|+||||#|||||||+| ||| +||||+ ||||||||| Sbjct 215 KKIHEEEIRELQSQMQETQVQIQMDMSKPD#LTAALRDIRVQYEGIAAKNISEAEEWYKSK 274 |
| Tetraodon nigroviridis | Query 196 DVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 |+||||||#|||||||+| ||||||+ |+|| ||||+|| Sbjct 69 DLDVSKPD#LTAALRDIRIQYESVASSNMQETEEWYRSK 106 |
| Protopterus aethiopicus | Query 196 DVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ++|+||||#|||||||+| ||||+||||+ +||||||+| Sbjct 246 EMDMSKPD#LTAALRDIRAQYESIAAKNIADAEEWYKTK 283 |
| Oreochromis mossambicus | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKS 232 ||+|+ |+||||||#|||||||+| |||++|+ |+|| ||||+| Sbjct 121 KKIHEDELRELQEQIMAQQVHVDLDVSKPD#LTAALRDIRVQYENMASSNMQETEEWYRS 179 |
| Lampetra fluviatilis | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 || || +|| |||#| ||||||| ||||+|+ |||||| |+||| Sbjct 132 KKAHDEEVRELQAMMQEQQVTVEVDTVKPD#LAAALRDVRAQYESIASSNLQEAETWFKSK 191 |
| Pongo pygmaeus | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 ||+|+ ++||+|||#|+|||+|+| ||| +||||+| ||||+||+ Sbjct 224 KKVHEEEIAELQAQIQYAQISVEMDVTKPD#LSAALKDIRAQYEKLAAKNMQNAEEWFKSR 283 |
| Dama dama | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 +|+|+ ++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Equus caballus | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 +|+|+ ++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVELDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Capreolus capreolus | Query 174 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 +|+|+ ++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
[Site 2] DSVDFSLADA30-INTEFKNTRT
Ala30 Ile
|
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Asp21 | Ser22 | Val23 | Asp24 | Phe25 | Ser26 | Leu27 | Ala28 | Asp29 | Ala30 |
|
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Ile31 | Asn32 | Thr33 | Glu34 | Phe35 | Lys36 | Asn37 | Thr38 | Arg39 | Thr40 |
Sequence conservation (by blast) Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| VTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKV |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | Mus musculus | 117.00 | 30 | unnamed protein product |
| 2 | N/A | 117.00 | 25 | - |
| 3 | Rattus norvegicus | 116.00 | 10 | vimentin |
| 4 | Homo sapiens | 115.00 | 36 | unnamed protein product |
| 5 | Canis familiaris | 115.00 | 18 | PREDICTED: similar to Vimentin isoform 2 |
| 6 | Macaca mulatta | 115.00 | 7 | PREDICTED: vimentin |
| 7 | Macaca fascicularis | 115.00 | 6 | VIME_MACFA Vimentin sp |
| 8 | Pan troglodytes | 115.00 | 6 | vimentin |
| 9 | synthetic construct | 115.00 | 2 | vimentin |
| 10 | Pan troglodytes verus | 115.00 | 1 | vimentin |
| 11 | Bos taurus | 114.00 | 11 | vimentin |
| 12 | Ovis aries | 114.00 | 2 | vimentin |
| 13 | Monodelphis domestica | 108.00 | 6 | PREDICTED: similar to vimentin |
| 14 | Gallus gallus | 89.70 | 5 | vimentin |
| 15 | Acipenser baerii | 86.70 | 2 | vimentin |
| 16 | Xenopus tropicalis | 83.20 | 8 | Unknown (protein for IMAGE:7605834) |
| 17 | Xenopus laevis | 82.80 | 21 | Vim1 protein |
| 18 | Daboia russellii | 82.00 | 1 | AF447708_1 vimentin |
| 19 | Oncorhynchus mykiss | 80.50 | 2 | VIME_ONCMY Vimentin emb |
| 20 | Cyprinus carpio | 77.40 | 1 | VIME_CYPCA Vimentin gb |
| 21 | Danio rerio | 77.00 | 24 | vimentin |
| 22 | Protopterus aethiopicus | 75.50 | 2 | type III desmin |
| 23 | Sus scrofa | 70.50 | 3 | desmin |
| 24 | Cricetulus griseus | 70.50 | 1 | vimentin |
| 25 | Tetraodon nigroviridis | 69.70 | 7 | unnamed protein product |
| 26 | Lampetra fluviatilis | 68.90 | 1 | intermediate filament protein type III |
| 27 | Canis lupus familiaris | 68.20 | 1 | desmin |
| 28 | Mesocricetus auratus | 67.40 | 1 | DESM_MESAU Desmin gb |
| 29 | Scyliorhinus stellaris | 62.80 | 2 | vimentin |
| 30 | Takifugu rubripes | 62.80 | 1 | TPA: desmin |
| 31 | Torpedo californica | 61.20 | 1 | IF3T_TORCA Type III intermediate filament emb |
| 32 | Pongo pygmaeus | 57.00 | 1 | hypothetical protein |
| 33 | Petromyzon marinus | 49.30 | 3 | neurofilament subunit NF-95 |
| 34 | Styela clava | 46.20 | 1 | intermediate filament protein A |
Top-ranked sequences
| organism | matching |
|---|---|
| Mus musculus | Query 1 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 1 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |
| N/A | Query 1 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 1 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |
| Rattus norvegicus | Query 1 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 ||||||||||||+|||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 VTRSSAVRLRSSMPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Homo sapiens | Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |
| Canis familiaris | Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |
| Macaca mulatta | Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |
| Macaca fascicularis | Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |
| Pan troglodytes | Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |
| synthetic construct | Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |
| Pan troglodytes verus | Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |
| Bos taurus | Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 63 TRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Ovis aries | Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 63 TRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Monodelphis domestica | Query 2 TRSSAVRLRSS--VPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDK 59 ||||| ||||| +|||||||||||||||||#||||||||||||||||||||||||||||| Sbjct 62 TRSSAARLRSSAPIPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDK 121 Query 60 V 60 | Query 60 V 60 |
| Gallus gallus | Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |++++||||||+| +|+ |+|||+||||#|||||| |||||||||||||||||||||| Sbjct 58 TKATSVRLRSSMPPMRM-HDAVDFTLADA#INTEFKANRTNEKVELQELNDRFANYIDKV 115 |
| Acipenser baerii | Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |+||+ ||||| | ||| +++||+|+||#|||||| ||||| |+| ||||||+||||| Sbjct 53 TKSSSTRLRSSAPQTRLLSETLDFALSDA#INTEFKANRTNEKAEMQHLNDRFASYIDKV 111 |
| Xenopus tropicalis | Query 1 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 | +||+||||||+| || |+|||+||||#+| |+| ||||| |+|||||||||+|||| Sbjct 82 VFKSSSVRLRSSLPPARLA-DTVDFTLADA#VNLEYKANRTNEKAEMQELNDRFANFIDKV 140 |
| Xenopus laevis | Query 1 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 | +||+||||||+| |+ |||||+||||#+| ||| ||||| |+ ||||||||+|||| Sbjct 56 VFKSSSVRLRSSLPPARMA-DSVDFALADA#VNLEFKANRTNEKAEMMELNDRFANFIDKV 114 |
| Daboia russellii | Query 4 SSAVRLRSSVPGVRLLQDS-VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 | |+|+||| | +| |+ ||||||||#|||||| ||||| |||||||||||||||| Sbjct 59 SKAMRVRSSFPPMRTGGDAMVDFSLADA#INTEFKANRTNEKAELQELNDRFANYIDKV 116 |
| Oncorhynchus mykiss | Query 4 SSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 | |||||| | || |+|||+|+||#||+||| ||||| |+| ||||||+||||| Sbjct 61 SKNVRLRSSAPMPRLSSDTVDFALSDA#INSEFKANRTNEKAEMQHLNDRFASYIDKV 117 |
| Cyprinus carpio | Query 4 SSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 | |+||| | || +++|| ||||#|||||| ||||| |+| ||||||+||||| Sbjct 56 SKGARVRSSGPLPRLATETLDFGLADA#INTEFKTNRTNEKAEMQHLNDRFASYIDKV 112 |
| Danio rerio | Query 1 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 | | +|+|| | || |++|| ||+|#|||||| ||||| |+| ||||||+||||| Sbjct 53 VYASKGLRVRSGAPLPRLATDTLDFGLAEA#INTEFKANRTNEKAEMQHLNDRFASYIDKV 112 |
| Protopterus aethiopicus | Query 1 VTRSSAVRLRSS-----VPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFAN 55 |+||||| || +| + +|+|||||||#+| || |||||| ||||||||||| Sbjct 46 VSRSSAVPSYSSFRATRIPAAKTALESMDFSLADA#MNQEFIQTRTNEKAELQELNDRFAN 105 Query 56 YIDKV 60 ||+|| Sbjct 106 YIEKV 110 |
| Sus scrofa | Query 2 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 +| | |+ || | | +|||||||#+| || ||||||||||||||||||||+|| Sbjct 63 SRLGATRVPSSSYGAGEL---LDFSLADA#VNQEFLTTRTNEKVELQELNDRFANYIEKV 118 |
| Cricetulus griseus | Query 26 SLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 |||||# ||||||||||||||||||||||||||||| Sbjct 1 SLADA#CNTEFKNTRTNEKVELQELNDRFANYIDKV 35 |
| Tetraodon nigroviridis | Query 8 RLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 ||||| || +++||||+||#||||| ||||| ++| ||||||+||+|| Sbjct 48 RLRSSSAMPRLASENLDFSLSDA#INTEFITNRTNEKAQMQSLNDRFASYIEKV 100 |
| Lampetra fluviatilis | Query 11 SSVPGVRLLQ-DSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 || |+ | +||||||||#+| +++ |||||||||||||||||+||||| Sbjct 75 SSASYVKALSGQNVDFSLADA#LNADYRTTRTNEKVELQELNDRFASYIDKV 125 |
| Canis lupus familiaris | Query 23 VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 +|||||||#+| || ||||||||||||||||||||+|| Sbjct 88 LDFSLADA#VNQEFLTTRTNEKVELQELNDRFANYIEKV 125 |
| Mesocricetus auratus | Query 23 VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 +|||||||#+| || ||||||||||||||||||||+|| Sbjct 88 LDFSLADA#VNQEFLATRTNEKVELQELNDRFANYIEKV 125 |
| Scyliorhinus stellaris | Query 1 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 + | | ||| ||+ + +|++||| ||#+|+||| |+||| |+ ||||| ||++||| Sbjct 49 IKRRSVRVNRSSAPGIAM-GNSLNFSLVDA#MNSEFKVNRSNEKAEMIELNDRLANFLDKV 107 |
| Takifugu rubripes | Query 21 DSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 + +||+||||#+| +| ||||||| ||| ||||||+||+|| Sbjct 61 EKLDFNLADA#MNQDFLNTRTNEKAELQHLNDRFASYIEKV 100 |
| Torpedo californica | Query 4 SSAVRL-RSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 | +||| ||| | | ++||+| ||#+|+||| ||||| |+ ||||| ||++||| Sbjct 59 SRSVRLVRSSAPVVAS-SSNLDFTLVDA#MNSEFKVNRTNEKAEMIELNDRLANFLDKV 115 |
| Pongo pygmaeus | Query 14 PGVRL--------LQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 || || | |||||| |#+| || || +|+ |+ |||||||+||+|| Sbjct 33 PGTRLSLARMPPPLPTRVDFSLAGA#LNAGFKETRASERAEMMELNDRFASYIEKV 87 |
| Petromyzon marinus | Query 12 SVPGVRLLQDSVDF-SLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 | | + ||+|| | + # + +||++| ||| ||+|||||| ||+|| Sbjct 69 STPALNSAADSLDFMSQSSV#FSGDFKHSRVNEKQLLQDLNDRFAGYIEKV 118 |
| Styela clava | Query 26 SLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 60 +| |+#+ |||+ | ||| |||+|| ||| || || Sbjct 87 ALEDS#MGTEFQGQRINEKAELQQLNSRFAEYITKV 121 |
* References
[PubMed ID: 10349636] Carninci P, Hayashizaki Y, High-efficiency full-length cDNA cloning. Methods Enzymol. 1999;303:19-44.
[PubMed ID: 11042159] ... Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M, Konno H, Okazaki Y, Muramatsu M, Hayashizaki Y, Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Genome Res. 2000 Oct;10(10):1617-30.
[PubMed ID: 11076861] ... Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K, Togawa Y, RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Genome Res. 2000 Nov;10(11):1757-71.
[PubMed ID: 11217851] ... Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W, Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F, Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M, Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N, Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C, Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA, Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J, Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF, Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L, Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S, Hayashizaki Y, Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90.
[PubMed ID: 12466851] ... Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002 Dec 5;420(6915):563-73.
[PubMed ID: 16141072] ... Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y, The transcriptional landscape of the mammalian genome. Science. 2005 Sep 2;309(5740):1559-63.
[PubMed ID: 16141073] ... Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C, Antisense transcription in the mammalian transcriptome. Science. 2005 Sep 2;309(5740):1564-6.