XSB1107 : vimentin [Cricetulus griseus]
[ CaMP Format ]
This entry is computationally expanded from SB0037
* Basic Information
| Organism | Cricetulus griseus (Chinese hamster) |
| Protein Names | vimentin |
| Gene Names | VIM |
| Gene Locus | Not available |
| GO Function | Not available |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 380 aa
Average Mass: 44.525 kDa
Monoisotopic Mass: 44.497 kDa
2. Domain Information
Annotated Domains: interpro / pfam / smart / prosite
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
|---|---|---|---|---|
| Filament 1. | 16 | 324 | 611.2 | 1e-180 |
| --- cleavage 178 (inside Filament 16..324) --- | ||||
3. Sequence Information
Fasta Sequence: XSB1107.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
1 [sites]
Cleavage sites (±10aa)
[Site 1] QIDVDVSKPD178-LTAALRDVRQ
Asp178 
Leu
 |
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Gln169 | Ile170 | Asp171 | Val172 | Asp173 | Val174 | Ser175 | Lys176 | Pro177 | Asp178 |
 |
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Leu179 | Thr180 | Ala181 | Ala182 | Leu183 | Arg184 | Asp185 | Val186 | Arg187 | Gln188 |
Sequence conservation (by blast)
Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| KKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSK |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | Mus musculus | 82.80 | 28 | unnamed protein product |
| 2 | N/A | 82.80 | 24 | V |
| 3 | Rattus norvegicus | 82.80 | 11 | vimentin |
| 4 | Cricetulus griseus | 82.80 | 1 | vimentin |
| 5 | Canis familiaris | 81.60 | 20 | PREDICTED: similar to Vimentin isoform 5 |
| 6 | Bos taurus | 81.60 | 8 | vimentin |
| 7 | Monodelphis domestica | 81.60 | 6 | PREDICTED: similar to vimentin |
| 8 | Gallus gallus | 81.60 | 4 | vimentin |
| 9 | Bubalus bubalis | 81.60 | 1 | vimentin |
| 10 | Sus scrofa domestica | 81.60 | 1 | vimentin |
| 11 | Homo sapiens | 81.30 | 46 | unnamed protein product |
| 12 | Macaca mulatta | 81.30 | 10 | PREDICTED: vimentin |
| 13 | Pan troglodytes | 81.30 | 8 | vimentin |
| 14 | Macaca fascicularis | 81.30 | 4 | unnamed protein product |
| 15 | synthetic construct | 81.30 | 3 | vimentin |
| 16 | Pan troglodytes verus | 81.30 | 1 | vimentin |
| 17 | Ovis aries | 80.10 | 2 | vimentin |
| 18 | Xenopus laevis | 77.40 | 15 | VIM1_XENLA Vimentin-1/2 emb |
| 19 | Daboia russellii | 77.40 | 1 | AF447708_1 vimentin |
| 20 | Xenopus tropicalis | 76.30 | 5 | Unknown (protein for IMAGE:7605834) |
| 21 | Bos grunniens | 76.30 | 1 | vimentin |
| 22 | Cyprinus carpio | 72.00 | 2 | VIME_CYPCA Vimentin gb |
| 23 | Danio rerio | 70.90 | 17 | vimentin |
| 24 | Sus scrofa | 69.30 | 3 | desmin |
| 25 | Canis lupus familiaris | 69.30 | 1 | desmin |
| 26 | Mesocricetus auratus | 69.30 | 1 | DESM_MESAU Desmin gb |
| 27 | Scyliorhinus stellaris | 68.90 | 1 | desmin |
| 28 | Oncorhynchus mykiss | 68.60 | 2 | VIME_ONCMY Vimentin emb |
| 29 | Acipenser baerii | 68.20 | 2 | vimentin |
| 30 | Takifugu rubripes | 68.20 | 1 | TPA: desmin |
| 31 | Tetraodon nigroviridis | 67.40 | 7 | unnamed protein product |
| 32 | Protopterus aethiopicus | 66.20 | 1 | type III desmin |
| 33 | Oreochromis mossambicus | 65.50 | 1 | glial fibrillary acidic protein |
| 34 | Lampetra fluviatilis | 63.90 | 2 | intermediate filament protein |
| 35 | Pongo pygmaeus | 62.80 | 5 | hypothetical protein |
| 36 | Dama dama | 62.00 | 1 | glial fibrillary acidic protein |
| 37 | Equus caballus | 62.00 | 1 | glial fibrillary acidic protein |
| 38 | Capreolus capreolus | 62.00 | 1 | glial fibrillary acidic protein |
Top-ranked sequences
| organism | matching |
|---|---|
| Mus musculus | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 174 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 |
| N/A | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 217 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 276 |
| Rattus norvegicus | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Cricetulus griseus | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 149 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 |
| Canis familiaris | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQDQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Bos taurus | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Monodelphis domestica | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| ||||+|||#|||||||||||||||||||||||||||||| Sbjct 236 KKLHDEEIQELQAQIQEQHIQIDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 |
| Gallus gallus | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 229 KKLHDEEIRELQAQLQEQHIQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 288 |
| Bubalus bubalis | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 40 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 99 |
| Sus scrofa domestica | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 105 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 164 |
| Homo sapiens | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 214 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 273 |
| Macaca mulatta | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Pan troglodytes | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Macaca fascicularis | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| synthetic construct | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Pan troglodytes verus | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Ovis aries | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| |+|||+||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSQPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Xenopus laevis | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| |+||||||#|||||||||||||+|||||| +|||||||| Sbjct 228 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEEWYKSK 287 |
| Daboia russellii | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||+ |+||+|||#|||||||||||||||| ||||||||||||| Sbjct 230 KKLHEEEIRELQAQIQDQHIQIDMDVAKPD#LTAALRDVRQQYESVATKNLQEAEEWYKSK 289 |
| Xenopus tropicalis | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| |+||||||#|||||||||||||+|||||| +||+||||| Sbjct 254 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEDWYKSK 313 |
| Bos grunniens | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 205 ||||| |+||||||#||||||||||||||||||||||||||| Sbjct 48 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 104 |
| Cyprinus carpio | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| |++|+|||#|||||+|||||||++|++||||+||||||| Sbjct 226 KKLHDEELAELQIQIQEQHVQIDMEVAKPD#LTAALKDVRQQYETLASRNLQESEEWYKSK 285 |
| Danio rerio | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||||| |++|+|||#|||||+|||||||++|++||||+|+||||| Sbjct 226 KKLHDEELAEMQIQMQEQHLQIDMEVTKPD#LTAALKDVRQQYETLASRNLQESEDWYKSK 285 |
| Sus scrofa | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||+|+ ++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 232 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 291 |
| Canis lupus familiaris | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||+|+ ++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Mesocricetus auratus | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||+|+ ++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Scyliorhinus stellaris | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||+|+ ++|+||||#|||||||+| ||| ++|||+|||||||||| Sbjct 224 KKVHEEELRELQAQLQEQHVQVEMDLSKPD#LTAALRDIRAQYECISAKNVQEAEEWYKSK 283 |
| Oncorhynchus mykiss | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 +|||| |+||+|||#||||||||| |||++|++|||++|+||||| Sbjct 231 RKLHDEEVAELQAQIQDQHVQIDMDVAKPD#LTAALRDVRVQYETLASRNLQDSEDWYKSK 290 |
| Acipenser baerii | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 +|||| |+||+|||#||||||||| |||++|+||+ |+|+||||| Sbjct 225 RKLHDEELAELQVQIQEQHIQIDMDVAKPD#LTAALRDVRLQYENLASKNMSESEDWYKSK 284 |
| Takifugu rubripes | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||+|+ +|+||||#|||||||+| ||| +||||+ ||||||||| Sbjct 215 KKIHEEEIRELQSQMQETQVQIQMDMSKPD#LTAALRDIRVQYEGIAAKNISEAEEWYKSK 274 |
| Tetraodon nigroviridis | Query 171 DVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 |+||||||#|||||||+| ||||||+ |+|| ||||+|| Sbjct 69 DLDVSKPD#LTAALRDIRIQYESVASSNMQETEEWYRSK 106 |
| Protopterus aethiopicus | Query 171 DVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ++|+||||#|||||||+| ||||+||||+ +||||||+| Sbjct 246 EMDMSKPD#LTAALRDIRAQYESIAAKNIADAEEWYKTK 283 |
| Oreochromis mossambicus | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKS 207 ||+|+ |+||||||#|||||||+| |||++|+ |+|| ||||+| Sbjct 121 KKIHEDELRELQEQIMAQQVHVDLDVSKPD#LTAALRDIRVQYENMASSNMQETEEWYRS 179 |
| Lampetra fluviatilis | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 || || +|| |||#| ||||||| ||||+|+ |||||| |+||| Sbjct 132 KKAHDEEVRELQAMMQEQQVTVEVDTVKPD#LAAALRDVRAQYESIASSNLQEAETWFKSK 191 |
| Pongo pygmaeus | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 ||+|+ ++||+|||#|+|||+|+| ||| +||||+| ||||+||+ Sbjct 224 KKVHEEEIAELQAQIQYAQISVEMDVTKPD#LSAALKDIRAQYEKLAAKNMQNAEEWFKSR 283 |
| Dama dama | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 +|+|+ ++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Equus caballus | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 +|+|+ ++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVELDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Capreolus capreolus | Query 149 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 +|+|+ ++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
* References
None.