logo CaMPDB: Calpain for Modulatory Proteolysis Database

XSB1108 : vimentin [Mus musculus]

[ CaMP Format ]

This entry is computationally expanded from SB0037

* Basic Information

OrganismMus musculus (house mouse)
Protein Namesvimentin
Gene NamesVim
Gene LocusNot available
GO FunctionNot available
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
CAA69019 N/A N/A P20152 N/A N/A N/A mmu:22352

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 446 aa

Average Mass: 51.564 kDa

Monoisotopic Mass: 51.533 kDa

2. Domain Information

Annotated Domains: interpro / pfam / smart / prosite

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
Filament_head 1. 28175.12.6e-19
--- cleavage 43 (inside Filament_head 2..81) ---
--- cleavage 71 (inside Filament_head 2..81) ---
Filament 1. 82390611.21e-180
--- cleavage 244 (inside Filament 82..390) ---

3. Sequence Information

Fasta Sequence: XSB1108.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Not Available.

* Cleavage Information

3 [sites]

Cleavage sites (±10aa)

[Site 1] QIDVDVSKPD244-LTAALRDVRQ

Asp244 Leu

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Gln235Ile236Asp237Val238Asp239Val240Ser241Lys242Pro243Asp244
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Leu245Thr246Ala247Ala248Leu249Arg250Asp251Val252Arg253Gln254

Sequence conservation (by blast)

[Site 2] SSSPGGAYVT43-RSSAVRLRSS

Thr43 Arg

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Ser34Ser35Ser36Pro37Gly38Gly39Ala40Tyr41Val42Thr43
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Arg44Ser45Ser46Ala47Val48Arg49Leu50Arg51Ser52Ser53

Sequence conservation (by blast)

[Site 3] DSVDFSLADA71-INTEFKNTRT

Ala71 Ile

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Asp62Ser63Val64Asp65Phe66Ser67Leu68Ala69Asp70Ala71
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Ile72Asn73Thr74Glu75Phe76Lys77Asn78Thr79Arg80Thr81

Sequence conservation (by blast)

* References

None.