XSB1110 : PREDICTED: similar to vimentin [Monodelphis domestica]
[ CaMP Format ]
This entry is computationally expanded from SB0037
* Basic Information
| Organism | Monodelphis domestica (gray short-tailed opossum) |
| Protein Names | similar to vimentin |
| Gene Names | LOC100020416; Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 35 Proteins |
| Gene Locus | Not available |
| GO Function | Not available |
| Entrez Protein | Entrez Nucleotide | Entrez Gene | UniProt | OMIM | HGNC | HPRD | KEGG |
|---|---|---|---|---|---|---|---|
| XP_001368237 | XM_001368200 | 100020416 | N/A | N/A | N/A | N/A | N/A |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 467 aa
Average Mass: 53.662 kDa
Monoisotopic Mass: 53.629 kDa
2. Domain Information
Annotated Domains: Not Available.
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
|---|---|---|---|---|
| Filament_head 1. | 6 | 102 | 115.0 | 2.5e-31 |
| --- cleavage 90 (inside Filament_head 6..102) --- | ||||
| Filament 1. | 103 | 411 | 607.2 | 1.7e-179 |
| --- cleavage 265 (inside Filament 103..411) --- | ||||
3. Sequence Information
Fasta Sequence: XSB1110.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
2 [sites]
Cleavage sites (±10aa)
[Site 1] QIDVDVAKPD265-LTAALRDVRQ
Asp265 
Leu
 |
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Gln256 | Ile257 | Asp258 | Val259 | Asp260 | Val261 | Ala262 | Lys263 | Pro264 | Asp265 |
 |
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Leu266 | Thr267 | Ala268 | Ala269 | Leu270 | Arg271 | Asp272 | Val273 | Arg274 | Gln275 |
Sequence conservation (by blast)
Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| KKLHDEEIQELQAQIQEQHIQIDVDVAKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSK |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | Monodelphis domestica | 82.80 | 6 | PREDICTED: similar to vimentin |
| 2 | Mus musculus | 81.60 | 27 | vimentin |
| 3 | N/A | 81.60 | 22 | - |
| 4 | Rattus norvegicus | 81.60 | 11 | vimentin |
| 5 | Cricetulus griseus | 81.60 | 1 | vimentin |
| 6 | Canis familiaris | 80.50 | 20 | PREDICTED: similar to vimentin isoform 1 |
| 7 | Bos taurus | 80.50 | 8 | vimentin |
| 8 | Gallus gallus | 80.50 | 5 | vimentin |
| 9 | Bubalus bubalis | 80.50 | 1 | vimentin |
| 10 | Sus scrofa domestica | 80.50 | 1 | vimentin |
| 11 | Homo sapiens | 80.10 | 46 | vimentin variant |
| 12 | Macaca mulatta | 80.10 | 10 | PREDICTED: vimentin |
| 13 | Pan troglodytes | 80.10 | 8 | vimentin |
| 14 | Macaca fascicularis | 80.10 | 4 | unnamed protein product |
| 15 | synthetic construct | 80.10 | 3 | vimentin |
| 16 | Pan troglodytes verus | 80.10 | 1 | vimentin |
| 17 | Ovis aries | 79.00 | 2 | vimentin |
| 18 | Daboia russellii | 78.60 | 1 | AF447708_1 vimentin |
| 19 | Xenopus laevis | 76.30 | 15 | vimentin 1 |
| 20 | Xenopus tropicalis | 75.10 | 5 | Unknown (protein for IMAGE:7605834) |
| 21 | Bos grunniens | 75.10 | 1 | vimentin |
| 22 | Cyprinus carpio | 73.20 | 2 | VIME_CYPCA Vimentin gb |
| 23 | Danio rerio | 70.50 | 17 | vimentin |
| 24 | Oncorhynchus mykiss | 69.70 | 2 | VIME_ONCMY Vimentin emb |
| 25 | Acipenser baerii | 69.30 | 2 | vimentin |
| 26 | Sus scrofa | 68.20 | 3 | muscle-specific intermediate filament desmin |
| 27 | Mesocricetus auratus | 68.20 | 1 | DESM_MESAU Desmin gb |
| 28 | Canis lupus familiaris | 68.20 | 1 | desmin |
| 29 | Scyliorhinus stellaris | 67.80 | 2 | desmin |
| 30 | Takifugu rubripes | 67.00 | 1 | TPA: desmin |
| 31 | Tetraodon nigroviridis | 66.60 | 7 | unnamed protein product |
| 32 | Protopterus aethiopicus | 65.10 | 1 | type III desmin |
| 33 | Lampetra fluviatilis | 64.70 | 2 | intermediate filament protein |
| 34 | Oreochromis mossambicus | 64.30 | 1 | glial fibrillary acidic protein |
| 35 | Dama dama | 63.20 | 1 | glial fibrillary acidic protein |
| 36 | Equus caballus | 63.20 | 1 | glial fibrillary acidic protein |
| 37 | Capreolus capreolus | 63.20 | 1 | glial fibrillary acidic protein |
| 38 | Pongo pygmaeus | 62.40 | 5 | hypothetical protein |
| 39 | Petromyzon marinus | 59.70 | 1 | neurofilament subunit NF-L |
Top-ranked sequences
| organism | matching |
|---|---|
| Monodelphis domestica | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 236 KKLHDEEIQELQAQIQEQHIQIDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 |
| Mus musculus | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| ||||+|||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| N/A | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| ||||+|||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Rattus norvegicus | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| ||||+|||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Cricetulus griseus | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| ||||+|||#|||||||||||||||||||||||||||||| Sbjct 149 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 |
| Canis familiaris | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| |+||+|||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQDQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Bos taurus | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| |+||+|||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Gallus gallus | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| |+||+|||#|||||||||||||||||||||||||||||| Sbjct 229 KKLHDEEIRELQAQLQEQHIQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 288 |
| Bubalus bubalis | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| |+||+|||#|||||||||||||||||||||||||||||| Sbjct 40 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 99 |
| Sus scrofa domestica | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| |+||+|||#|||||||||||||||||||||||||||||| Sbjct 105 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 164 |
| Homo sapiens | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||+ ||||+|||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Macaca mulatta | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||+ ||||+|||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Pan troglodytes | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||+ ||||+|||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Macaca fascicularis | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||+ ||||+|||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| synthetic construct | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||+ ||||+|||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Pan troglodytes verus | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||+ ||||+|||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Ovis aries | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| |+||++||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSQPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Daboia russellii | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||+ |+||||||#|||||||||||||||| ||||||||||||| Sbjct 230 KKLHEEEIRELQAQIQDQHIQIDMDVAKPD#LTAALRDVRQQYESVATKNLQEAEEWYKSK 289 |
| Xenopus laevis | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| |+||+|||#|||||||||||||+|||||| +|||||||| Sbjct 229 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEEWYKSK 288 |
| Xenopus tropicalis | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| |+||+|||#|||||||||||||+|||||| +||+||||| Sbjct 254 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEDWYKSK 313 |
| Bos grunniens | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 292 ||||| |+||+|||#||||||||||||||||||||||||||| Sbjct 48 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 104 |
| Cyprinus carpio | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| |++|||||#|||||+|||||||++|++||||+||||||| Sbjct 226 KKLHDEELAELQIQIQEQHVQIDMEVAKPD#LTAALKDVRQQYETLASRNLQESEEWYKSK 285 |
| Danio rerio | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||||| |++| |||#|||||+|||||||++|++||||+|+||||| Sbjct 226 KKLHDEELAEMQIQMQEQHLQIDMEVTKPD#LTAALKDVRQQYETLASRNLQESEDWYKSK 285 |
| Oncorhynchus mykiss | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 +|||| |+||||||#||||||||| |||++|++|||++|+||||| Sbjct 231 RKLHDEEVAELQAQIQDQHVQIDMDVAKPD#LTAALRDVRVQYETLASRNLQDSEDWYKSK 290 |
| Acipenser baerii | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 +|||| |+||||||#||||||||| |||++|+||+ |+|+||||| Sbjct 225 RKLHDEELAELQVQIQEQHIQIDMDVAKPD#LTAALRDVRLQYENLASKNMSESEDWYKSK 284 |
| Sus scrofa | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||+|+ ++|++|||#|||||||+| |||++||||+ ||||||||| Sbjct 241 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 300 |
| Mesocricetus auratus | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||+|+ ++|++|||#|||||||+| |||++||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Canis lupus familiaris | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||+|+ ++|++|||#|||||||+| |||++||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Scyliorhinus stellaris | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||+|+ ++|++|||#|||||||+| ||| ++|||+|||||||||| Sbjct 224 KKVHEEELRELQAQLQEQHVQVEMDLSKPD#LTAALRDIRAQYECISAKNVQEAEEWYKSK 283 |
| Takifugu rubripes | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||+|+ +|++|||#|||||||+| ||| +||||+ ||||||||| Sbjct 215 KKIHEEEIRELQSQMQETQVQIQMDMSKPD#LTAALRDIRVQYEGIAAKNISEAEEWYKSK 274 |
| Tetraodon nigroviridis | Query 258 DVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 |+++||||#||||||||| |||++|+||+||+||||||| Sbjct 231 DMEMAKPD#LTAALRDVRLQYENLASKNIQESEEWYKSK 268 |
| Protopterus aethiopicus | Query 258 DVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ++|++|||#|||||||+| ||||+||||+ +||||||+| Sbjct 246 EMDMSKPD#LTAALRDIRAQYESIAAKNIADAEEWYKTK 283 |
| Lampetra fluviatilis | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 || || +|| |||#| ||||||| ||||+|+ |||||| |+||| Sbjct 132 KKAHDEEVRELQAMMQEQQVTVEVDTVKPD#LAAALRDVRAQYESIASSNLQEAETWFKSK 191 |
| Oreochromis mossambicus | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKS 294 ||+|+ |+||+|||#|||||||+| |||++|+ |+|| ||||+| Sbjct 121 KKIHEDELRELQEQIMAQQVHVDLDVSKPD#LTAALRDIRVQYENMASSNMQETEEWYRS 179 |
| Dama dama | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 +|+|+ ++||||||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Equus caballus | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 +|+|+ ++||||||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVELDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Capreolus capreolus | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 +|+|+ ++||||||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Pongo pygmaeus | Query 236 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ||+|+ ++|| |||#|+|||+|+| ||| +||||+| ||||+||+ Sbjct 224 KKVHEEEIAELQAQIQYAQISVEMDVTKPD#LSAALKDIRAQYEKLAAKNMQNAEEWFKSR 283 |
| Petromyzon marinus | Query 258 DVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 ++ ||+||#||+||||+| ||| +||||+| ||||+|+| Sbjct 252 EMSVARPD#LTSALRDIRAQYEVLAAKNMQSAEEWFKTK 289 |
[Site 2] LQDSVDFSLA90-DAINTEFKNT
Ala90 Asp
|
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Leu81 | Gln82 | Asp83 | Ser84 | Val85 | Asp86 | Phe87 | Ser88 | Leu89 | Ala90 |
|
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Asp91 | Ala92 | Ile93 | Asn94 | Thr95 | Glu96 | Phe97 | Lys98 | Asn99 | Thr100 |
Sequence conservation (by blast) Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| ATRSSAARLRSSAPIPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYID |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | Monodelphis domestica | 96.70 | 6 | PREDICTED: similar to vimentin |
| 2 | Homo sapiens | 93.60 | 37 | vimentin variant |
| 3 | Mus musculus | 93.60 | 30 | unnamed protein product |
| 4 | N/A | 93.60 | 24 | - |
| 5 | Canis familiaris | 93.60 | 19 | PREDICTED: similar to vimentin isoform 1 |
| 6 | Bos taurus | 93.60 | 11 | vimentin |
| 7 | Macaca mulatta | 93.60 | 8 | PREDICTED: vimentin |
| 8 | Pan troglodytes | 93.60 | 7 | vimentin |
| 9 | Macaca fascicularis | 93.60 | 6 | VIME_MACFA Vimentin sp |
| 10 | Ovis aries | 93.60 | 3 | vimentin |
| 11 | synthetic construct | 93.60 | 2 | vimentin |
| 12 | Pan troglodytes verus | 93.60 | 1 | vimentin |
| 13 | Rattus norvegicus | 92.80 | 10 | vimentin |
| 14 | Gallus gallus | 72.40 | 5 | vimentin |
| 15 | Acipenser baerii | 68.60 | 2 | vimentin |
| 16 | Daboia russellii | 68.60 | 1 | AF447708_1 vimentin |
| 17 | Protopterus aethiopicus | 67.80 | 2 | type III desmin |
| 18 | Cyprinus carpio | 67.00 | 1 | VIME_CYPCA Vimentin gb |
| 19 | Cricetulus griseus | 67.00 | 1 | vimentin |
| 20 | Danio rerio | 66.20 | 21 | vimentin |
| 21 | Oncorhynchus mykiss | 66.20 | 2 | VIME_ONCMY Vimentin emb |
| 22 | Xenopus tropicalis | 65.10 | 8 | Unknown (protein for IMAGE:7605834) |
| 23 | Lampetra fluviatilis | 65.10 | 1 | intermediate filament protein type III |
| 24 | Xenopus laevis | 64.70 | 20 | Vim1 protein |
| 25 | Sus scrofa | 64.70 | 3 | muscle-specific intermediate filament desmin |
| 26 | Canis lupus familiaris | 64.70 | 1 | desmin |
| 27 | Mesocricetus auratus | 63.90 | 1 | DESM_MESAU Desmin gb |
| 28 | Tetraodon nigroviridis | 61.20 | 7 | unnamed protein product |
| 29 | Takifugu rubripes | 59.30 | 1 | TPA: desmin |
| 30 | Scyliorhinus stellaris | 57.40 | 2 | desmin |
| 31 | Pongo pygmaeus | 53.50 | 2 | hypothetical protein |
| 32 | Torpedo californica | 53.50 | 1 | IF3T_TORCA Type III intermediate filament emb |
| 33 | Petromyzon marinus | 45.10 | 3 | neurofilament subunit NF-L |
Top-ranked sequences
| organism | matching |
|---|---|
| Monodelphis domestica | Query 74 PIPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 |||||||||||||||||#|||||||||||||||||||||||||||||| Query 74 PIPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 |
| Homo sapiens | Query 75 IPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 74 VPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 119 |
| Mus musculus | Query 75 IPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 74 VPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 119 |
| N/A | Query 75 IPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 74 VPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 119 |
| Canis familiaris | Query 75 IPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 74 VPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 119 |
| Bos taurus | Query 75 IPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 74 VPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 119 |
| Macaca mulatta | Query 75 IPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 74 VPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 119 |
| Pan troglodytes | Query 75 IPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 74 VPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 119 |
| Macaca fascicularis | Query 75 IPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 74 VPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 119 |
| Ovis aries | Query 75 IPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 74 VPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 119 |
| synthetic construct | Query 75 IPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 74 VPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 119 |
| Pan troglodytes verus | Query 75 IPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 74 VPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 119 |
| Rattus norvegicus | Query 75 IPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 74 MPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 119 |
| Gallus gallus | Query 81 LQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 + |+|||+||#|||||||| |||||||||||||||||||| Sbjct 74 MHDAVDFTLA#DAINTEFKANRTNEKVELQELNDRFANYID 113 |
| Acipenser baerii | Query 76 PGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 | ||| +++||+|+#|||||||| ||||| |+| ||||||+||| Sbjct 65 PQTRLLSETLDFALS#DAINTEFKANRTNEKAEMQHLNDRFASYID 109 |
| Daboia russellii | Query 85 VDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 ||||||#|||||||| ||||| |||||||||||||| Sbjct 79 VDFSLA#DAINTEFKANRTNEKAELQELNDRFANYID 114 |
| Protopterus aethiopicus | Query 75 IPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 || + +|+|||||#||+| || |||||| |||||||||||||+ Sbjct 63 IPAAKTALESMDFSLA#DAMNQEFIQTRTNEKAELQELNDRFANYIE 108 |
| Cyprinus carpio | Query 74 PIPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 |+| || +++|| ||#|||||||| ||||| |+| ||||||+||| Sbjct 66 PLP--RLATETLDFGLA#DAINTEFKTNRTNEKAEMQHLNDRFASYID 110 |
| Cricetulus griseus | Query 88 SLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 |||#|| ||||||||||||||||||||||||||| Sbjct 1 SLA#DACNTEFKNTRTNEKVELQELNDRFANYID 33 |
| Danio rerio | Query 74 PIPGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 |+| || |++|| ||#+||||||| ||||| |+| ||||||+||| Sbjct 66 PLP--RLATDTLDFGLA#EAINTEFKANRTNEKAEMQHLNDRFASYID 110 |
| Oncorhynchus mykiss | Query 76 PGVRLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 | || |+|||+|+#||||+||| ||||| |+| ||||||+||| Sbjct 71 PMPRLSSDTVDFALS#DAINSEFKANRTNEKAEMQHLNDRFASYID 115 |
| Xenopus tropicalis | Query 81 LQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 | |+|||+||#||+| |+| ||||| |+|||||||||+|| Sbjct 99 LADTVDFTLA#DAVNLEYKANRTNEKAEMQELNDRFANFID 138 |
| Lampetra fluviatilis | Query 84 SVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +||||||#||+| +++ |||||||||||||||||+||| Sbjct 87 NVDFSLA#DALNADYRTTRTNEKVELQELNDRFASYID 123 |
| Xenopus laevis | Query 81 LQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 + |||||+||#||+| ||| ||||| |+ ||||||||+|| Sbjct 73 MADSVDFALA#DAVNLEFKANRTNEKAEMMELNDRFANFID 112 |
| Sus scrofa | Query 85 VDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||#||+| || ||||||||||||||||||||+ Sbjct 90 LDFSLA#DAVNQEFLTTRTNEKVELQELNDRFANYIE 125 |
| Canis lupus familiaris | Query 85 VDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||#||+| || ||||||||||||||||||||+ Sbjct 88 LDFSLA#DAVNQEFLTTRTNEKVELQELNDRFANYIE 123 |
| Mesocricetus auratus | Query 85 VDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 +|||||#||+| || ||||||||||||||||||||+ Sbjct 88 LDFSLA#DAVNQEFLATRTNEKVELQELNDRFANYIE 123 |
| Tetraodon nigroviridis | Query 79 RLLQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 || | |||+||#+|+| || ||+||| ||||||||||++|+ Sbjct 66 RLSYDKVDFTLA#EAVNQEFLTTRSNEKAELQELNDRFASFIE 107 |
| Takifugu rubripes | Query 83 DSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 + +||+||#||+| +| ||||||| ||| ||||||+||+ Sbjct 61 EKLDFNLA#DAMNQDFLNTRTNEKAELQHLNDRFASYIE 98 |
| Scyliorhinus stellaris | Query 85 VDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 |||++|#||+| || |||||| |+| ||||||+||+ Sbjct 73 VDFNIA#DALNQEFVQTRTNEKAEMQHLNDRFASYIE 108 |
| Pongo pygmaeus | Query 76 PGVRL--------LQDSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 || || | ||||||# |+| || || +|+ |+ |||||||+||+ Sbjct 33 PGTRLSLARMPPPLPTRVDFSLA#GALNAGFKETRASERAEMMELNDRFASYIE 85 |
| Torpedo californica | Query 84 SVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 ++||+| #||+|+||| ||||| |+ ||||| ||++| Sbjct 77 NLDFTLV#DAMNSEFKVNRTNEKAEMIELNDRLANFLD 113 |
| Petromyzon marinus | Query 83 DSVDFSLA#DAINTEFKNTRTNEKVELQELNDRFANYID 120 | +| | |#+++ | |+ || || +||+|||||| +|+ Sbjct 75 DMIDLSQA#ESLGNELKSIRTQEKDQLQDLNDRFAGFIE 112 |
* References
None.