XSB1111 : vimentin [Bos taurus]
[ CaMP Format ]
This entry is computationally expanded from SB0037
* Basic Information
| Organism | Bos taurus (cattle) |
| Protein Names | vimentin |
| Gene Names | VIM; vimentin |
| Gene Locus | 13q16-q17; chromosome 13 |
| GO Function | Not available |
| Entrez Protein | Entrez Nucleotide | Entrez Gene | UniProt | OMIM | HGNC | HPRD | KEGG |
|---|---|---|---|---|---|---|---|
| NP_776394 | NM_173969 | 280955 | P48616 | N/A | N/A | N/A | bta:280955 |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 466 aa
Average Mass: 53.728 kDa
Monoisotopic Mass: 53.695 kDa
2. Domain Information
Annotated Domains: interpro / pfam / smart / prosite
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
|---|---|---|---|---|
| Filament_head 1. | 6 | 101 | 121.2 | 3.3e-33 |
| --- cleavage 91 (inside Filament_head 6..101) --- | ||||
| Filament 1. | 102 | 410 | 610.6 | 1.6e-180 |
| --- cleavage 264 (inside Filament 102..410) --- | ||||
3. Sequence Information
Fasta Sequence: XSB1111.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
2 [sites]
Cleavage sites (±10aa)
[Site 1] QIDMDVSKPD264-LTAALRDVRQ
Asp264 
Leu
 |
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Gln255 | Ile256 | Asp257 | Met258 | Asp259 | Val260 | Ser261 | Lys262 | Pro263 | Asp264 |
 |
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Leu265 | Thr266 | Ala267 | Ala268 | Leu269 | Arg270 | Asp271 | Val272 | Arg273 | Gln274 |
Sequence conservation (by blast)
Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| KKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSK |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | N/A | 83.20 | 25 | - |
| 2 | Canis familiaris | 83.20 | 21 | PREDICTED: similar to vimentin isoform 1 |
| 3 | Bos taurus | 83.20 | 9 | vimentin |
| 4 | Gallus gallus | 83.20 | 4 | vimentin |
| 5 | Sus scrofa domestica | 83.20 | 1 | vimentin |
| 6 | Bubalus bubalis | 83.20 | 1 | vimentin |
| 7 | Mus musculus | 81.60 | 29 | vimentin |
| 8 | Rattus norvegicus | 81.60 | 11 | vimentin |
| 9 | Ovis aries | 81.60 | 2 | vimentin |
| 10 | Cricetulus griseus | 81.60 | 1 | vimentin |
| 11 | Monodelphis domestica | 80.50 | 6 | PREDICTED: similar to vimentin |
| 12 | Homo sapiens | 80.10 | 45 | vimentin |
| 13 | Macaca mulatta | 80.10 | 10 | PREDICTED: vimentin |
| 14 | Pan troglodytes | 80.10 | 8 | vimentin |
| 15 | Macaca fascicularis | 80.10 | 4 | unnamed protein product |
| 16 | synthetic construct | 80.10 | 3 | vimentin |
| 17 | Pan troglodytes verus | 80.10 | 1 | vimentin |
| 18 | Xenopus laevis | 79.00 | 15 | vimentin 1 |
| 19 | Daboia russellii | 79.00 | 1 | AF447708_1 vimentin |
| 20 | Xenopus tropicalis | 77.80 | 5 | Unknown (protein for IMAGE:7605834) |
| 21 | Bos grunniens | 77.80 | 1 | vimentin |
| 22 | Cyprinus carpio | 73.60 | 1 | VIME_CYPCA Vimentin gb |
| 23 | Danio rerio | 72.40 | 17 | vimentin |
| 24 | Sus scrofa | 70.90 | 3 | desmin |
| 25 | Canis lupus familiaris | 70.90 | 1 | desmin |
| 26 | Mesocricetus auratus | 70.90 | 1 | DESM_MESAU Desmin gb |
| 27 | Scyliorhinus stellaris | 70.50 | 1 | desmin |
| 28 | Oncorhynchus mykiss | 70.10 | 2 | VIME_ONCMY Vimentin emb |
| 29 | Acipenser baerii | 69.70 | 2 | vimentin |
| 30 | Takifugu rubripes | 69.70 | 1 | TPA: desmin |
| 31 | Tetraodon nigroviridis | 67.80 | 7 | unnamed protein product |
| 32 | Protopterus aethiopicus | 67.80 | 1 | type III desmin |
| 33 | Oreochromis mossambicus | 65.90 | 1 | glial fibrillary acidic protein |
| 34 | Pongo pygmaeus | 64.30 | 4 | hypothetical protein |
| 35 | Dama dama | 63.50 | 1 | glial fibrillary acidic protein |
| 36 | Capreolus capreolus | 63.50 | 1 | glial fibrillary acidic protein |
| 37 | Lampetra fluviatilis | 62.80 | 1 | intermediate filament protein |
| 38 | Equus caballus | 62.40 | 1 | glial fibrillary acidic protein |
Top-ranked sequences
| organism | matching |
|---|---|
| N/A | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDAEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Canis familiaris | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQDQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Bos taurus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Gallus gallus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 229 KKLHDEEIRELQAQLQEQHIQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 288 |
| Sus scrofa domestica | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 105 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 164 |
| Bubalus bubalis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 40 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 99 |
| Mus musculus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Rattus norvegicus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Ovis aries | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |||||+||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSQPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Cricetulus griseus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 149 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 |
| Monodelphis domestica | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||+|||#|||||||||||||||||||||||||||||| Sbjct 236 KKLHDEEIQELQAQIQEQHIQIDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 |
| Homo sapiens | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Macaca mulatta | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Pan troglodytes | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Macaca fascicularis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| synthetic construct | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Pan troglodytes verus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Xenopus laevis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||+|||||| +|||||||| Sbjct 229 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEEWYKSK 288 |
| Daboia russellii | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ ||||+|||#|||||||||||||||| ||||||||||||| Sbjct 230 KKLHEEEIRELQAQIQDQHIQIDMDVAKPD#LTAALRDVRQQYESVATKNLQEAEEWYKSK 289 |
| Xenopus tropicalis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||+|||||| +||+||||| Sbjct 254 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEDWYKSK 313 |
| Bos grunniens | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 291 ||||| ||||||||#||||||||||||||||||||||||||| Sbjct 48 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 104 |
| Cyprinus carpio | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||+|+|||#|||||+|||||||++|++||||+||||||| Sbjct 226 KKLHDEELAELQIQIQEQHVQIDMEVAKPD#LTAALKDVRQQYETLASRNLQESEEWYKSK 285 |
| Danio rerio | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||+|+|||#|||||+|||||||++|++||||+|+||||| Sbjct 226 KKLHDEELAEMQIQMQEQHLQIDMEVTKPD#LTAALKDVRQQYETLASRNLQESEDWYKSK 285 |
| Sus scrofa | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ +||+||||#|||||||+| |||++||||+ ||||||||| Sbjct 232 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 291 |
| Canis lupus familiaris | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ +||+||||#|||||||+| |||++||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Mesocricetus auratus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ +||+||||#|||||||+| |||++||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Scyliorhinus stellaris | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ +||+||||#|||||||+| ||| ++|||+|||||||||| Sbjct 224 KKVHEEELRELQAQLQEQHVQVEMDLSKPD#LTAALRDIRAQYECISAKNVQEAEEWYKSK 283 |
| Oncorhynchus mykiss | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|||| ||||+|||#||||||||| |||++|++|||++|+||||| Sbjct 231 RKLHDEEVAELQAQIQDQHVQIDMDVAKPD#LTAALRDVRVQYETLASRNLQDSEDWYKSK 290 |
| Acipenser baerii | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|||| ||||+|||#||||||||| |||++|+||+ |+|+||||| Sbjct 225 RKLHDEELAELQVQIQEQHIQIDMDVAKPD#LTAALRDVRLQYENLASKNMSESEDWYKSK 284 |
| Takifugu rubripes | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ ||+||||#|||||||+| ||| +||||+ ||||||||| Sbjct 215 KKIHEEEIRELQSQMQETQVQIQMDMSKPD#LTAALRDIRVQYEGIAAKNISEAEEWYKSK 274 |
| Tetraodon nigroviridis | Query 257 DMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |+||||||#|||||||+| ||||||+ |+|| ||||+|| Sbjct 69 DLDVSKPD#LTAALRDIRIQYESVASSNMQETEEWYRSK 106 |
| Protopterus aethiopicus | Query 257 DMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +||+||||#|||||||+| ||||+||||+ +||||||+| Sbjct 246 EMDMSKPD#LTAALRDIRAQYESIAAKNIADAEEWYKTK 283 |
| Oreochromis mossambicus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKS 293 ||+|+ |+||||||#|||||||+| |||++|+ |+|| ||||+| Sbjct 121 KKIHEDELRELQEQIMAQQVHVDLDVSKPD#LTAALRDIRVQYENMASSNMQETEEWYRS 179 |
| Pongo pygmaeus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ +|||+|||#|+|||+|+| ||| +||||+| ||||+||+ Sbjct 224 KKVHEEEIAELQAQIQYAQISVEMDVTKPD#LSAALKDIRAQYEKLAAKNMQNAEEWFKSR 283 |
| Dama dama | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|+|+ +|||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Capreolus capreolus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|+|+ +|||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Lampetra fluviatilis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 || || ++| |||#| ||||||| ||||+|+ |||||| |+||| Sbjct 132 KKAHDEEVRELQAMMQEQQVTVEVDTVKPD#LAAALRDVRAQYESIASSNLQEAETWFKSK 191 |
| Equus caballus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|+|+ ++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVELDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
[Site 2] DSVDFSLADA91-INTEFKNTRT
Ala91 Ile
|
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Asp82 | Ser83 | Val84 | Asp85 | Phe86 | Ser87 | Leu88 | Ala89 | Asp90 | Ala91 |
|
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Ile92 | Asn93 | Thr94 | Glu95 | Phe96 | Lys97 | Asn98 | Thr99 | Arg100 | Thr101 |
Sequence conservation (by blast) Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| ATRSSAVRLRSGVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKV |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | N/A | 118.00 | 26 | - |
| 2 | Bos taurus | 118.00 | 11 | vimentin |
| 3 | Ovis aries | 118.00 | 2 | vimentin |
| 4 | Homo sapiens | 115.00 | 34 | vimentin |
| 5 | Canis familiaris | 115.00 | 20 | PREDICTED: similar to vimentin isoform 1 |
| 6 | Macaca mulatta | 115.00 | 7 | PREDICTED: vimentin |
| 7 | Pan troglodytes | 115.00 | 5 | vimentin |
| 8 | Macaca fascicularis | 115.00 | 4 | VIME_MACFA Vimentin sp |
| 9 | synthetic construct | 115.00 | 2 | vimentin |
| 10 | Pan troglodytes verus | 115.00 | 1 | vimentin |
| 11 | Mus musculus | 114.00 | 31 | unnamed protein product |
| 12 | Rattus norvegicus | 113.00 | 12 | vimentin |
| 13 | Monodelphis domestica | 108.00 | 6 | PREDICTED: similar to vimentin |
| 14 | Gallus gallus | 89.70 | 5 | vimentin |
| 15 | Acipenser baerii | 86.70 | 2 | vimentin |
| 16 | Xenopus tropicalis | 80.90 | 8 | Unknown (protein for IMAGE:7605834) |
| 17 | Xenopus laevis | 80.50 | 21 | Vim1 protein |
| 18 | Daboia russellii | 80.50 | 1 | AF447708_1 vimentin |
| 19 | Danio rerio | 79.00 | 22 | vimentin |
| 20 | Oncorhynchus mykiss | 79.00 | 2 | VIME_ONCMY Vimentin emb |
| 21 | Cyprinus carpio | 75.90 | 1 | VIME_CYPCA Vimentin gb |
| 22 | Protopterus aethiopicus | 72.40 | 2 | type III desmin |
| 23 | Sus scrofa | 70.50 | 3 | desmin |
| 24 | Cricetulus griseus | 70.50 | 1 | vimentin |
| 25 | Tetraodon nigroviridis | 69.30 | 7 | unnamed protein product |
| 26 | Lampetra fluviatilis | 68.60 | 1 | intermediate filament protein type III |
| 27 | Canis lupus familiaris | 68.20 | 1 | desmin |
| 28 | Mesocricetus auratus | 67.40 | 1 | DESM_MESAU Desmin gb |
| 29 | Takifugu rubripes | 63.90 | 1 | TPA: desmin |
| 30 | Scyliorhinus stellaris | 60.80 | 2 | desmin |
| 31 | Torpedo californica | 59.70 | 1 | IF3T_TORCA Type III intermediate filament emb |
| 32 | Pongo pygmaeus | 57.00 | 1 | hypothetical protein |
| 33 | Petromyzon marinus | 47.80 | 3 | neurofilament subunit NF-L |
| 34 | Myxicola infundibulum | 46.60 | 1 | intermediate filament |
| 35 | Styela clava | 46.20 | 1 | intermediate filament protein A |
Top-ranked sequences
| organism | matching |
|---|---|
| N/A | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Bos taurus | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Ovis aries | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Homo sapiens | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 ATRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Canis familiaris | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 ATRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Macaca mulatta | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 ATRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Pan troglodytes | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 ATRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Macaca fascicularis | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 ATRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| synthetic construct | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 ATRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Pan troglodytes verus | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 ATRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Mus musculus | Query 63 TRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Rattus norvegicus | Query 63 TRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||| +|||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 63 TRSSAVRLRSSMPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Monodelphis domestica | Query 62 ATRSSAVRLRSG--VPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYID 119 |||||| |||| +|||||||||||||||||#|||||||||||||||||||||||||||| Sbjct 61 ATRSSAARLRSSAPIPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYID 120 Query 120 KV 121 || Query 120 KV 121 |
| Gallus gallus | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||++++||||| +| +|+ |+|||+||||#|||||| |||||||||||||||||||||| Sbjct 37 ATKATSVRLRSSMPPMRM-HDAVDFTLADA#INTEFKANRTNEKVELQELNDRFANYIDKV 95 |
| Acipenser baerii | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||+||+ |||| | ||| +++||+|+||#|||||| ||||| |+| ||||||+||||| Sbjct 52 ATKSSSTRLRSSAPQTRLLSETLDFALSDA#INTEFKANRTNEKAEMQHLNDRFASYIDKV 111 |
| Xenopus tropicalis | Query 64 RSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +||+||||| +| || |+|||+||||#+| |+| ||||| |+|||||||||+|||| Sbjct 84 KSSSVRLRSSLPPARLA-DTVDFTLADA#VNLEYKANRTNEKAEMQELNDRFANFIDKV 140 |
| Xenopus laevis | Query 64 RSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +||+||||| +| |+ |||||+||||#+| ||| ||||| |+ ||||||||+|||| Sbjct 58 KSSSVRLRSSLPPARMA-DSVDFALADA#VNLEFKANRTNEKAEMMELNDRFANFIDKV 114 |
| Daboia russellii | Query 65 SSAVRLRSGVPGVRLLQDS-VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | |+|+|| | +| |+ ||||||||#|||||| ||||| |||||||||||||||| Sbjct 59 SKAMRVRSSFPPMRTGGDAMVDFSLADA#INTEFKANRTNEKAELQELNDRFANYIDKV 116 |
| Danio rerio | Query 65 SSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | +|+||| | || |++|| ||+|#|||||| ||||| |+| ||||||+||||| Sbjct 56 SKGLRVRSGAPLPRLATDTLDFGLAEA#INTEFKANRTNEKAEMQHLNDRFASYIDKV 112 |
| Oncorhynchus mykiss | Query 65 SSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | ||||| | || |+|||+|+||#||+||| ||||| |+| ||||||+||||| Sbjct 61 SKNVRLRSSAPMPRLSSDTVDFALSDA#INSEFKANRTNEKAEMQHLNDRFASYIDKV 117 |
| Cyprinus carpio | Query 65 SSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | |+|| | || +++|| ||||#|||||| ||||| |+| ||||||+||||| Sbjct 56 SKGARVRSSGPLPRLATETLDFGLADA#INTEFKTNRTNEKAEMQHLNDRFASYIDKV 112 |
| Protopterus aethiopicus | Query 63 TRSSAVRLRSG-----VPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANY 117 +||||| | +| + +|+|||||||#+| || |||||| |||||||||||| Sbjct 47 SRSSAVPSYSSFRATRIPAAKTALESMDFSLADA#MNQEFIQTRTNEKAELQELNDRFANY 106 Query 118 IDKV 121 |+|| Sbjct 107 IEKV 110 |
| Sus scrofa | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |+| | |+ | | | +|||||||#+| || ||||||||||||||||||||+|| Sbjct 62 ASRLGATRVPSSSYGAGEL---LDFSLADA#VNQEFLTTRTNEKVELQELNDRFANYIEKV 118 |
| Cricetulus griseus | Query 87 SLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||# ||||||||||||||||||||||||||||| Sbjct 1 SLADA#CNTEFKNTRTNEKVELQELNDRFANYIDKV 35 |
| Tetraodon nigroviridis | Query 62 ATRSS-AVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDK 120 |+||| | || || | |||+||+|#+| || ||+||| ||||||||||++|+| Sbjct 49 ASRSSYQQRSRSSAQAPRLSYDKVDFTLAEA#VNQEFLTTRSNEKAELQELNDRFASFIEK 108 Query 121 V 121 | Query 121 V 121 |
| Lampetra fluviatilis | Query 83 SVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +||||||||#+| +++ |||||||||||||||||+||||| Sbjct 87 NVDFSLADA#LNADYRTTRTNEKVELQELNDRFASYIDKV 125 |
| Canis lupus familiaris | Query 84 VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +|||||||#+| || ||||||||||||||||||||+|| Sbjct 88 LDFSLADA#VNQEFLTTRTNEKVELQELNDRFANYIEKV 125 |
| Mesocricetus auratus | Query 84 VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +|||||||#+| || ||||||||||||||||||||+|| Sbjct 88 LDFSLADA#VNQEFLATRTNEKVELQELNDRFANYIEKV 125 |
| Takifugu rubripes | Query 65 SSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |+|+| || + +||+||||#+| +| ||||||| ||| ||||||+||+|| Sbjct 52 STALRTYSG--------EKLDFNLADA#MNQDFLNTRTNEKAELQHLNDRFASYIEKV 100 |
| Scyliorhinus stellaris | Query 84 VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||++|||#+| || |||||| |+| ||||||+||+|| Sbjct 73 VDFNIADA#LNQEFVQTRTNEKAEMQHLNDRFASYIEKV 110 |
| Torpedo californica | Query 65 SSAVRL-RSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | +||| || | | ++||+| ||#+|+||| ||||| |+ ||||| ||++||| Sbjct 59 SRSVRLVRSSAPVVAS-SSNLDFTLVDA#MNSEFKVNRTNEKAEMIELNDRLANFLDKV 115 |
| Pongo pygmaeus | Query 75 PGVRL--------LQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 || || | |||||| |#+| || || +|+ |+ |||||||+||+|| Sbjct 33 PGTRLSLARMPPPLPTRVDFSLAGA#LNAGFKETRASERAEMMELNDRFASYIEKV 87 |
| Petromyzon marinus | Query 63 TRSSAVRLRSGVP--------------GVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQ 108 ||| +| ||| + | +| | |++#+ | |+ || || +|| Sbjct 42 TRSVSVGSTLGVPVGSFRRTHSRYSSMSIPATSDMIDLSQAES#LGNELKSIRTQEKDQLQ 101 Query 109 ELNDRFANYIDKV 121 +|||||| +|++| Sbjct 102 DLNDRFAGFIERV 114 |
| Myxicola infundibulum | Query 71 RSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||| | +| | |# |+| |+||| +|| |||||||||+|| Sbjct 51 RSGAPSFSYDGESSSTVGAAA#RTNEYKIIRSNEKEQLQGLNDRFANYIEKV 101 |
| Styela clava | Query 87 SLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +| |+#+ |||+ | ||| |||+|| ||| || || Sbjct 87 ALEDS#MGTEFQGQRINEKAELQQLNSRFAEYITKV 121 |
* References
[PubMed ID: 16876394] Blain EJ, Gilbert SJ, Hayes AJ, Duance VC, Disassembly of the vimentin cytoskeleton disrupts articular cartilage chondrocyte homeostasis. Matrix Biol. 2006 Sep;25(7):398-408. Epub 2006 Jun 18.
[PubMed ID: 12658628] ... Ishiwata H, Katsuma S, Kizaki K, Patel OV, Nakano H, Takahashi T, Imai K, Hirasawa A, Shiojima S, Ikawa H, Suzuki Y, Tsujimoto G, Izaike Y, Todoroki J, Hashizume K, Characterization of gene expression profiles in early bovine pregnancy using a custom cDNA microarray. Mol Reprod Dev. 2003 May;65(1):9-18.
[PubMed ID: 8144034] ... Hess JF, Casselman JT, FitzGerald PG, Nucleotide sequence of the bovine vimentin-encoding cDNA. Gene. 1994 Mar 25;140(2):257-9.