XSB1123 : vimentin
[ CaMP Format ]
This entry is computationally expanded from SB0037
* Basic Information
| Organism | Bos taurus (cattle) |
| Protein Names | Not available |
| Gene Names | VIM |
| Gene Locus | Not available |
| GO Function | Not available |
| Entrez Protein | Entrez Nucleotide | Entrez Gene | UniProt | OMIM | HGNC | HPRD | KEGG |
|---|---|---|---|---|---|---|---|
| AAA53661 | N/A | N/A | P48616 | N/A | N/A | N/A | bta:280955 |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 466 aa
Average Mass: 53.677 kDa
Monoisotopic Mass: 53.644 kDa
2. Domain Information
Annotated Domains: interpro / pfam / smart / prosite
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
|---|---|---|---|---|
| Filament_head 1. | 6 | 101 | 121.2 | 3.3e-33 |
| --- cleavage 91 (inside Filament_head 6..101) --- | ||||
| Filament 1. | 102 | 410 | 602.7 | 3.8e-178 |
| --- cleavage 264 (inside Filament 102..410) --- | ||||
3. Sequence Information
Fasta Sequence: XSB1123.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
2 [sites]
Cleavage sites (±10aa)
[Site 1] QIDMDVSKPD264-LTAALRDVRQ
Asp264 
Leu
 |
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Gln255 | Ile256 | Asp257 | Met258 | Asp259 | Val260 | Ser261 | Lys262 | Pro263 | Asp264 |
 |
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Leu265 | Thr266 | Ala267 | Ala268 | Leu269 | Arg270 | Asp271 | Val272 | Arg273 | Gln274 |
Sequence conservation (by blast)
Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| KKLHDAEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSK |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | N/A | 85.10 | 25 | - |
| 2 | Canis familiaris | 83.20 | 21 | PREDICTED: similar to vimentin isoform 1 |
| 3 | Bos taurus | 83.20 | 9 | vimentin |
| 4 | Gallus gallus | 83.20 | 4 | vimentin |
| 5 | Sus scrofa domestica | 83.20 | 1 | vimentin |
| 6 | Bubalus bubalis | 83.20 | 1 | vimentin |
| 7 | Mus musculus | 81.60 | 29 | vimentin |
| 8 | Rattus norvegicus | 81.60 | 11 | vimentin |
| 9 | Ovis aries | 81.60 | 2 | vimentin |
| 10 | Cricetulus griseus | 81.60 | 1 | vimentin |
| 11 | Monodelphis domestica | 80.50 | 6 | PREDICTED: similar to vimentin |
| 12 | Homo sapiens | 80.10 | 45 | vimentin |
| 13 | Macaca mulatta | 80.10 | 10 | PREDICTED: vimentin |
| 14 | Pan troglodytes | 80.10 | 8 | vimentin |
| 15 | Macaca fascicularis | 80.10 | 4 | unnamed protein product |
| 16 | synthetic construct | 80.10 | 3 | vimentin |
| 17 | Pan troglodytes verus | 80.10 | 1 | vimentin |
| 18 | Xenopus laevis | 79.00 | 15 | vimentin 1 |
| 19 | Daboia russellii | 79.00 | 1 | AF447708_1 vimentin |
| 20 | Xenopus tropicalis | 77.80 | 5 | Unknown (protein for IMAGE:7605834) |
| 21 | Bos grunniens | 77.80 | 1 | vimentin |
| 22 | Cyprinus carpio | 73.60 | 1 | VIME_CYPCA Vimentin gb |
| 23 | Danio rerio | 72.40 | 17 | vimentin |
| 24 | Sus scrofa | 70.90 | 3 | desmin |
| 25 | Canis lupus familiaris | 70.90 | 1 | desmin |
| 26 | Mesocricetus auratus | 70.90 | 1 | DESM_MESAU Desmin gb |
| 27 | Scyliorhinus stellaris | 70.50 | 1 | desmin |
| 28 | Oncorhynchus mykiss | 70.10 | 2 | VIME_ONCMY Vimentin emb |
| 29 | Acipenser baerii | 69.70 | 2 | vimentin |
| 30 | Takifugu rubripes | 69.70 | 1 | TPA: desmin |
| 31 | Tetraodon nigroviridis | 67.80 | 7 | unnamed protein product |
| 32 | Protopterus aethiopicus | 67.80 | 1 | type III desmin |
| 33 | Oreochromis mossambicus | 65.50 | 1 | glial fibrillary acidic protein |
| 34 | Pongo pygmaeus | 64.30 | 4 | hypothetical protein |
| 35 | Dama dama | 63.50 | 1 | glial fibrillary acidic protein |
| 36 | Capreolus capreolus | 63.50 | 1 | glial fibrillary acidic protein |
| 37 | Lampetra fluviatilis | 62.80 | 1 | intermediate filament protein |
| 38 | Equus caballus | 62.40 | 1 | glial fibrillary acidic protein |
Top-ranked sequences
| organism | matching |
|---|---|
| N/A | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDAEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Canis familiaris | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQDQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Bos taurus | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Gallus gallus | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 229 KKLHDEEIRELQAQLQEQHIQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 288 |
| Sus scrofa domestica | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 105 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 164 |
| Bubalus bubalis | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 40 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 99 |
| Mus musculus | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Rattus norvegicus | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Ovis aries | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |||||+||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSQPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Cricetulus griseus | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 149 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 |
| Monodelphis domestica | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||+|||#|||||||||||||||||||||||||||||| Sbjct 236 KKLHDEEIQELQAQIQEQHIQIDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 |
| Homo sapiens | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Macaca mulatta | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Pan troglodytes | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Macaca fascicularis | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| synthetic construct | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Pan troglodytes verus | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Xenopus laevis | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||+|||||| +|||||||| Sbjct 229 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEEWYKSK 288 |
| Daboia russellii | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ ||||+|||#|||||||||||||||| ||||||||||||| Sbjct 230 KKLHEEEIRELQAQIQDQHIQIDMDVAKPD#LTAALRDVRQQYESVATKNLQEAEEWYKSK 289 |
| Xenopus tropicalis | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||+|||||| +||+||||| Sbjct 254 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEDWYKSK 313 |
| Bos grunniens | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 291 ||||| ||||||||#||||||||||||||||||||||||||| Sbjct 48 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 104 |
| Cyprinus carpio | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||+|+|||#|||||+|||||||++|++||||+||||||| Sbjct 226 KKLHDEELAELQIQIQEQHVQIDMEVAKPD#LTAALKDVRQQYETLASRNLQESEEWYKSK 285 |
| Danio rerio | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||+|+|||#|||||+|||||||++|++||||+|+||||| Sbjct 226 KKLHDEELAEMQIQMQEQHLQIDMEVTKPD#LTAALKDVRQQYETLASRNLQESEDWYKSK 285 |
| Sus scrofa | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ +||+||||#|||||||+| |||++||||+ ||||||||| Sbjct 232 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 291 |
| Canis lupus familiaris | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ +||+||||#|||||||+| |||++||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Mesocricetus auratus | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ +||+||||#|||||||+| |||++||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Scyliorhinus stellaris | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ +||+||||#|||||||+| ||| ++|||+|||||||||| Sbjct 224 KKVHEEELRELQAQLQEQHVQVEMDLSKPD#LTAALRDIRAQYECISAKNVQEAEEWYKSK 283 |
| Oncorhynchus mykiss | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|||| ||||+|||#||||||||| |||++|++|||++|+||||| Sbjct 231 RKLHDEEVAELQAQIQDQHVQIDMDVAKPD#LTAALRDVRVQYETLASRNLQDSEDWYKSK 290 |
| Acipenser baerii | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|||| ||||+|||#||||||||| |||++|+||+ |+|+||||| Sbjct 225 RKLHDEELAELQVQIQEQHIQIDMDVAKPD#LTAALRDVRLQYENLASKNMSESEDWYKSK 284 |
| Takifugu rubripes | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ ||+||||#|||||||+| ||| +||||+ ||||||||| Sbjct 215 KKIHEEEIRELQSQMQETQVQIQMDMSKPD#LTAALRDIRVQYEGIAAKNISEAEEWYKSK 274 |
| Tetraodon nigroviridis | Query 257 DMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |+||||||#|||||||+| ||||||+ |+|| ||||+|| Sbjct 69 DLDVSKPD#LTAALRDIRIQYESVASSNMQETEEWYRSK 106 |
| Protopterus aethiopicus | Query 257 DMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +||+||||#|||||||+| ||||+||||+ +||||||+| Sbjct 246 EMDMSKPD#LTAALRDIRAQYESIAAKNIADAEEWYKTK 283 |
| Oreochromis mossambicus | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKS 293 ||+|+ |+||||||#|||||||+| |||++|+ |+|| ||||+| Sbjct 121 KKIHEDELRELQEQIMAQQVHVDLDVSKPD#LTAALRDIRVQYENMASSNMQETEEWYRS 179 |
| Pongo pygmaeus | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ +|||+|||#|+|||+|+| ||| +||||+| ||||+||+ Sbjct 224 KKVHEEEIAELQAQIQYAQISVEMDVTKPD#LSAALKDIRAQYEKLAAKNMQNAEEWFKSR 283 |
| Dama dama | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|+|+ +|||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Capreolus capreolus | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|+|+ +|||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Lampetra fluviatilis | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 || || ++| |||#| ||||||| ||||+|+ |||||| |+||| Sbjct 132 KKAHDEEVRELQAMMQEQQVTVEVDTVKPD#LAAALRDVRAQYESIASSNLQEAETWFKSK 191 |
| Equus caballus | Query 235 KKLHDAXXXXXXXXXXXXXXXXDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|+|+ ++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVELDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
[Site 2] DSVDFSLADA91-INTEFKNTRT
Ala91 Ile
|
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Asp82 | Ser83 | Val84 | Asp85 | Phe86 | Ser87 | Leu88 | Ala89 | Asp90 | Ala91 |
|
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Ile92 | Asn93 | Thr94 | Glu95 | Phe96 | Lys97 | Asn98 | Thr99 | Arg100 | Thr101 |
Sequence conservation (by blast) Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| ATRSSAVRLRSGVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKV |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | N/A | 118.00 | 26 | - |
| 2 | Bos taurus | 118.00 | 11 | vimentin |
| 3 | Ovis aries | 118.00 | 2 | vimentin |
| 4 | Homo sapiens | 115.00 | 34 | vimentin |
| 5 | Canis familiaris | 115.00 | 20 | PREDICTED: similar to vimentin isoform 1 |
| 6 | Macaca mulatta | 115.00 | 7 | PREDICTED: vimentin |
| 7 | Pan troglodytes | 115.00 | 5 | vimentin |
| 8 | Macaca fascicularis | 115.00 | 4 | VIME_MACFA Vimentin sp |
| 9 | synthetic construct | 115.00 | 2 | vimentin |
| 10 | Pan troglodytes verus | 115.00 | 1 | vimentin |
| 11 | Mus musculus | 114.00 | 31 | unnamed protein product |
| 12 | Rattus norvegicus | 113.00 | 12 | vimentin |
| 13 | Monodelphis domestica | 108.00 | 6 | PREDICTED: similar to vimentin |
| 14 | Gallus gallus | 89.70 | 5 | vimentin |
| 15 | Acipenser baerii | 86.70 | 2 | vimentin |
| 16 | Xenopus tropicalis | 80.90 | 8 | Unknown (protein for IMAGE:7605834) |
| 17 | Xenopus laevis | 80.50 | 21 | Vim1 protein |
| 18 | Daboia russellii | 80.50 | 1 | AF447708_1 vimentin |
| 19 | Danio rerio | 79.00 | 22 | vimentin |
| 20 | Oncorhynchus mykiss | 79.00 | 2 | VIME_ONCMY Vimentin emb |
| 21 | Cyprinus carpio | 75.90 | 1 | VIME_CYPCA Vimentin gb |
| 22 | Protopterus aethiopicus | 72.40 | 2 | type III desmin |
| 23 | Sus scrofa | 70.50 | 3 | desmin |
| 24 | Cricetulus griseus | 70.50 | 1 | vimentin |
| 25 | Tetraodon nigroviridis | 69.30 | 7 | unnamed protein product |
| 26 | Lampetra fluviatilis | 68.60 | 1 | intermediate filament protein type III |
| 27 | Canis lupus familiaris | 68.20 | 1 | desmin |
| 28 | Mesocricetus auratus | 67.40 | 1 | DESM_MESAU Desmin gb |
| 29 | Takifugu rubripes | 63.90 | 1 | TPA: desmin |
| 30 | Scyliorhinus stellaris | 60.80 | 2 | desmin |
| 31 | Torpedo californica | 59.70 | 1 | IF3T_TORCA Type III intermediate filament emb |
| 32 | Pongo pygmaeus | 57.00 | 1 | hypothetical protein |
| 33 | Petromyzon marinus | 47.80 | 3 | neurofilament subunit NF-L |
| 34 | Myxicola infundibulum | 46.60 | 1 | intermediate filament |
| 35 | Styela clava | 46.20 | 1 | intermediate filament protein A |
Top-ranked sequences
| organism | matching |
|---|---|
| N/A | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Bos taurus | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Ovis aries | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Homo sapiens | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 ATRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Canis familiaris | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 ATRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Macaca mulatta | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 ATRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Pan troglodytes | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 ATRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Macaca fascicularis | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 ATRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| synthetic construct | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 ATRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Pan troglodytes verus | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 ATRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Mus musculus | Query 63 TRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Rattus norvegicus | Query 63 TRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||| +|||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 63 TRSSAVRLRSSMPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Monodelphis domestica | Query 62 ATRSSAVRLRSG--VPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYID 119 |||||| |||| +|||||||||||||||||#|||||||||||||||||||||||||||| Sbjct 61 ATRSSAARLRSSAPIPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYID 120 Query 120 KV 121 || Query 120 KV 121 |
| Gallus gallus | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||++++||||| +| +|+ |+|||+||||#|||||| |||||||||||||||||||||| Sbjct 37 ATKATSVRLRSSMPPMRM-HDAVDFTLADA#INTEFKANRTNEKVELQELNDRFANYIDKV 95 |
| Acipenser baerii | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||+||+ |||| | ||| +++||+|+||#|||||| ||||| |+| ||||||+||||| Sbjct 52 ATKSSSTRLRSSAPQTRLLSETLDFALSDA#INTEFKANRTNEKAEMQHLNDRFASYIDKV 111 |
| Xenopus tropicalis | Query 64 RSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +||+||||| +| || |+|||+||||#+| |+| ||||| |+|||||||||+|||| Sbjct 84 KSSSVRLRSSLPPARLA-DTVDFTLADA#VNLEYKANRTNEKAEMQELNDRFANFIDKV 140 |
| Xenopus laevis | Query 64 RSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +||+||||| +| |+ |||||+||||#+| ||| ||||| |+ ||||||||+|||| Sbjct 58 KSSSVRLRSSLPPARMA-DSVDFALADA#VNLEFKANRTNEKAEMMELNDRFANFIDKV 114 |
| Daboia russellii | Query 65 SSAVRLRSGVPGVRLLQDS-VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | |+|+|| | +| |+ ||||||||#|||||| ||||| |||||||||||||||| Sbjct 59 SKAMRVRSSFPPMRTGGDAMVDFSLADA#INTEFKANRTNEKAELQELNDRFANYIDKV 116 |
| Danio rerio | Query 65 SSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | +|+||| | || |++|| ||+|#|||||| ||||| |+| ||||||+||||| Sbjct 56 SKGLRVRSGAPLPRLATDTLDFGLAEA#INTEFKANRTNEKAEMQHLNDRFASYIDKV 112 |
| Oncorhynchus mykiss | Query 65 SSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | ||||| | || |+|||+|+||#||+||| ||||| |+| ||||||+||||| Sbjct 61 SKNVRLRSSAPMPRLSSDTVDFALSDA#INSEFKANRTNEKAEMQHLNDRFASYIDKV 117 |
| Cyprinus carpio | Query 65 SSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | |+|| | || +++|| ||||#|||||| ||||| |+| ||||||+||||| Sbjct 56 SKGARVRSSGPLPRLATETLDFGLADA#INTEFKTNRTNEKAEMQHLNDRFASYIDKV 112 |
| Protopterus aethiopicus | Query 63 TRSSAVRLRSG-----VPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANY 117 +||||| | +| + +|+|||||||#+| || |||||| |||||||||||| Sbjct 47 SRSSAVPSYSSFRATRIPAAKTALESMDFSLADA#MNQEFIQTRTNEKAELQELNDRFANY 106 Query 118 IDKV 121 |+|| Sbjct 107 IEKV 110 |
| Sus scrofa | Query 62 ATRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |+| | |+ | | | +|||||||#+| || ||||||||||||||||||||+|| Sbjct 62 ASRLGATRVPSSSYGAGEL---LDFSLADA#VNQEFLTTRTNEKVELQELNDRFANYIEKV 118 |
| Cricetulus griseus | Query 87 SLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||# ||||||||||||||||||||||||||||| Sbjct 1 SLADA#CNTEFKNTRTNEKVELQELNDRFANYIDKV 35 |
| Tetraodon nigroviridis | Query 62 ATRSS-AVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDK 120 |+||| | || || | |||+||+|#+| || ||+||| ||||||||||++|+| Sbjct 49 ASRSSYQQRSRSSAQAPRLSYDKVDFTLAEA#VNQEFLTTRSNEKAELQELNDRFASFIEK 108 Query 121 V 121 | Query 121 V 121 |
| Lampetra fluviatilis | Query 83 SVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +||||||||#+| +++ |||||||||||||||||+||||| Sbjct 87 NVDFSLADA#LNADYRTTRTNEKVELQELNDRFASYIDKV 125 |
| Canis lupus familiaris | Query 84 VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +|||||||#+| || ||||||||||||||||||||+|| Sbjct 88 LDFSLADA#VNQEFLTTRTNEKVELQELNDRFANYIEKV 125 |
| Mesocricetus auratus | Query 84 VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +|||||||#+| || ||||||||||||||||||||+|| Sbjct 88 LDFSLADA#VNQEFLATRTNEKVELQELNDRFANYIEKV 125 |
| Takifugu rubripes | Query 65 SSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |+|+| || + +||+||||#+| +| ||||||| ||| ||||||+||+|| Sbjct 52 STALRTYSG--------EKLDFNLADA#MNQDFLNTRTNEKAELQHLNDRFASYIEKV 100 |
| Scyliorhinus stellaris | Query 84 VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||++|||#+| || |||||| |+| ||||||+||+|| Sbjct 73 VDFNIADA#LNQEFVQTRTNEKAEMQHLNDRFASYIEKV 110 |
| Torpedo californica | Query 65 SSAVRL-RSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | +||| || | | ++||+| ||#+|+||| ||||| |+ ||||| ||++||| Sbjct 59 SRSVRLVRSSAPVVAS-SSNLDFTLVDA#MNSEFKVNRTNEKAEMIELNDRLANFLDKV 115 |
| Pongo pygmaeus | Query 75 PGVRL--------LQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 || || | |||||| |#+| || || +|+ |+ |||||||+||+|| Sbjct 33 PGTRLSLARMPPPLPTRVDFSLAGA#LNAGFKETRASERAEMMELNDRFASYIEKV 87 |
| Petromyzon marinus | Query 63 TRSSAVRLRSGVP--------------GVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQ 108 ||| +| ||| + | +| | |++#+ | |+ || || +|| Sbjct 42 TRSVSVGSTLGVPVGSFRRTHSRYSSMSIPATSDMIDLSQAES#LGNELKSIRTQEKDQLQ 101 Query 109 ELNDRFANYIDKV 121 +|||||| +|++| Sbjct 102 DLNDRFAGFIERV 114 |
| Myxicola infundibulum | Query 71 RSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||| | +| | |# |+| |+||| +|| |||||||||+|| Sbjct 51 RSGAPSFSYDGESSSTVGAAA#RTNEYKIIRSNEKEQLQGLNDRFANYIEKV 101 |
| Styela clava | Query 87 SLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +| |+#+ |||+ | ||| |||+|| ||| || || Sbjct 87 ALEDS#MGTEFQGQRINEKAELQQLNSRFAEYITKV 121 |
* References
[PubMed ID: 8144034] Hess JF, Casselman JT, FitzGerald PG, Nucleotide sequence of the bovine vimentin-encoding cDNA. Gene. 1994 Mar 25;140(2):257-9.