logo CaMPDB: Calpain for Modulatory Proteolysis Database

XSB1138 : unnamed protein product [Homo sapiens]

[ CaMP Format ]

This entry is computationally expanded from SB0037

* Basic Information

OrganismHomo sapiens (human)
Protein NamesVimentin
Gene NamesVIM
Gene LocusNot available
GO FunctionNot available
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
BAC05002 N/A N/A P08670 N/A N/A N/A hsa:7431

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 454 aa

Average Mass: 52.438 kDa

Monoisotopic Mass: 52.406 kDa

2. Domain Information

Annotated Domains: interpro / pfam / smart / prosite

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
Filament_head 1. 68997.54.5e-26
--- cleavage 79 (inside Filament_head 6..89) ---
Filament 1. 90398614.11.5e-181
--- cleavage 252 (inside Filament 90..398) ---

3. Sequence Information

Fasta Sequence: XSB1138.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Known Structures in PDB: 1GK4 (X-ray; 230 A; A/B/C/D/E/F=328-411), 1GK6 (X-ray; 190 A; A/B=385-412), 1GK7 (X-ray; 140 A; A=102-138), 3G1E (X-ray; 183 A; A/B=102-138)

* Cleavage Information

2 [sites]

Cleavage sites (±10aa)

[Site 1] QIDVDVSKPD252-LTAALRDVRQ

Asp252 Leu

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Gln243Ile244Asp245Val246Asp247Val248Ser249Lys250Pro251Asp252
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Leu253Thr254Ala255Ala256Leu257Arg258Asp259Val260Arg261Gln262

Sequence conservation (by blast)

[Site 2] DSVDFSLADA79-INTEFKNTRT

Ala79 Ile

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Asp70Ser71Val72Asp73Phe74Ser75Leu76Ala77Asp78Ala79
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Ile80Asn81Thr82Glu83Phe84Lys85Asn86Thr87Arg88Thr89

Sequence conservation (by blast)

* References

[PubMed ID: 14702039] Ota T, Suzuki Y, Nishikawa T, Otsuki T, Sugiyama T, Irie R, Wakamatsu A, Hayashi K, Sato H, Nagai K, Kimura K, Makita H, Sekine M, Obayashi M, Nishi T, Shibahara T, Tanaka T, Ishii S, Yamamoto J, Saito K, Kawai Y, Isono Y, Nakamura Y, Nagahari K, Murakami K, Yasuda T, Iwayanagi T, Wagatsuma M, Shiratori A, Sudo H, Hosoiri T, Kaku Y, Kodaira H, Kondo H, Sugawara M, Takahashi M, Kanda K, Yokoi T, Furuya T, Kikkawa E, Omura Y, Abe K, Kamihara K, Katsuta N, Sato K, Tanikawa M, Yamazaki M, Ninomiya K, Ishibashi T, Yamashita H, Murakawa K, Fujimori K, Tanai H, Kimata M, Watanabe M, Hiraoka S, Chiba Y, Ishida S, Ono Y, Takiguchi S, Watanabe S, Yosida M, Hotuta T, Kusano J, Kanehori K, Takahashi-Fujii A, Hara H, Tanase TO, Nomura Y, Togiya S, Komai F, Hara R, Takeuchi K, Arita M, Imose N, Musashino K, Yuuki H, Oshima A, Sasaki N, Aotsuka S, Yoshikawa Y, Matsunawa H, Ichihara T, Shiohata N, Sano S, Moriya S, Momiyama H, Satoh N, Takami S, Terashima Y, Suzuki O, Nakagawa S, Senoh A, Mizoguchi H, Goto Y, Shimizu F, Wakebe H, Hishigaki H, Watanabe T, Sugiyama A, Takemoto M, Kawakami B, Yamazaki M, Watanabe K, Kumagai A, Itakura S, Fukuzumi Y, Fujimori Y, Komiyama M, Tashiro H, Tanigami A, Fujiwara T, Ono T, Yamada K, Fujii Y, Ozaki K, Hirao M, Ohmori Y, Kawabata A, Hikiji T, Kobatake N, Inagaki H, Ikema Y, Okamoto S, Okitani R, Kawakami T, Noguchi S, Itoh T, Shigeta K, Senba T, Matsumura K, Nakajima Y, Mizuno T, Morinaga M, Sasaki M, Togashi T, Oyama M, Hata H, Watanabe M, Komatsu T, Mizushima-Sugano J, Satoh T, Shirai Y, Takahashi Y, Nakagawa K, Okumura K, Nagase T, Nomura N, Kikuchi H, Masuho Y, Yamashita R, Nakai K, Yada T, Nakamura Y, Ohara O, Isogai T, Sugano S, Complete sequencing and characterization of 21,243 full-length human cDNAs. Nat Genet. 2004 Jan;36(1):40-5. Epub 2003 Dec 21.