XSB1144 : glutamate receptor, ionotropic, NMDA2A (epsilon 1) [Mus musculus]
[ CaMP Format ]
This entry is computationally expanded from SB0072
* Basic Information
Organism | Mus musculus (house mouse) |
Protein Names | Glutamate [NMDA] receptor subunit epsilon-1; N-methyl D-aspartate receptor subtype 2A; NMDAR2A; NR2A; glutamate receptor; ionotropic; NMDA2A (epsilon 1); GluRepsilon1 |
Gene Names | Grin2a; glutamate receptor, ionotropic, NMDA2A (epsilon 1) |
Gene Locus | 16 3.4 cM; chromosome 16 |
GO Function | Not available |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 1464 aa
Average Mass: 165.421 kDa
Monoisotopic Mass: 165.316 kDa
2. Domain Information
Annotated Domains: interpro / pfam / smart / prosite
Computationally Assigned Domains (Pfam+HMMER):
domain name | begin | end | score | e-value |
---|---|---|---|---|
HS1_rep 1. | 179 | 215 | 6.7 | 3.1 |
Lig_chan-Glu_bd 1. | 439 | 502 | 80.6 | 5.5e-21 |
Lig_chan 1. | 554 | 838 | 375.4 | 9.9e-110 |
NMDAR2_C 1. | 839 | 1464 | 1166.2 | 0 |
--- cleavage 1329 (inside NMDAR2_C 839..1464) --- | ||||
--- cleavage 1278 (inside NMDAR2_C 839..1464) --- |
3. Sequence Information
Fasta Sequence: XSB1144.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
2 [sites]
Cleavage sites (±10aa)
[Site 1] LEGNLYGSLF1329-SVPSSKLLGN
Phe1329 Ser
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P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
---|---|---|---|---|---|---|---|---|---|
Leu1320 | Glu1321 | Gly1322 | Asn1323 | Leu1324 | Tyr1325 | Gly1326 | Ser1327 | Leu1328 | Phe1329 |
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P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
Ser1330 | Val1331 | Pro1332 | Ser1333 | Ser1334 | Lys1335 | Leu1336 | Leu1337 | Gly1338 | Asn1339 |
Sequence conservation (by blast)
[Site 2] QDWSQNNALQ1278-FQKNKLKINR
Gln1278 Phe
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P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
---|---|---|---|---|---|---|---|---|---|
Gln1269 | Asp1270 | Trp1271 | Ser1272 | Gln1273 | Asn1274 | Asn1275 | Ala1276 | Leu1277 | Gln1278 |
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P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
Phe1279 | Gln1280 | Lys1281 | Asn1282 | Lys1283 | Leu1284 | Lys1285 | Ile1286 | Asn1287 | Arg1288 |
Sequence conservation (by blast)
* References
[PubMed ID: 19276107] Cho KK, Khibnik L, Philpot BD, Bear MF, The ratio of NR2A/B NMDA receptor subunits determines the qualities of ocular dominance plasticity in visual cortex. Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5377-82. Epub 2009 Mar 10.