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XSB1145 : Glutamate [NMDA] receptor subunit epsilon-1

[ CaMP Format ]

This entry is computationally expanded from SB0072

* Basic Information

OrganismRattus norvegicus (Norway rat)
Protein NamesN-methyl D-aspartate receptor subtype 2A; NMDAR2A; NR2A
Gene NamesGrin2a
Gene LocusNot available
GO FunctionNot available
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
Q00959 N/A N/A Q00959 N/A N/A N/A rno:24409

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 1464 aa

Average Mass: 165.469 kDa

Monoisotopic Mass: 165.363 kDa

2. Domain Information

Annotated Domains: interpro / pfam / smart / prosite

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
HS1_rep 1. 1792156.73.1
Lig_chan-Glu_bd 1. 43950280.65.5e-21
Lig_chan 1. 554838376.93.7e-110
NMDAR2_C 1. 83914641159.40
--- cleavage 1329 (inside NMDAR2_C 839..1464) ---
--- cleavage 1278 (inside NMDAR2_C 839..1464) ---

3. Sequence Information

Fasta Sequence: XSB1145.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Known Structures in PDB: 2A5S (X-ray; 170 A; A=401-802), 2A5T (X-ray; 200 A; B=401-802)

* Cleavage Information

2 [sites]

Cleavage sites (±10aa)

[Site 1] LEGNLYGSLF1329-SVPSSKLLGN

Phe1329 Ser

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Leu1320Glu1321Gly1322Asn1323Leu1324Tyr1325Gly1326Ser1327Leu1328Phe1329
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Ser1330Val1331Pro1332Ser1333Ser1334Lys1335Leu1336Leu1337Gly1338Asn1339

Sequence conservation (by blast)

[Site 2] QDWSQNNALQ1278-FQKNKLRINR

Gln1278 Phe

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Gln1269Asp1270Trp1271Ser1272Gln1273Asn1274Asn1275Ala1276Leu1277Gln1278
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Phe1279Gln1280Lys1281Asn1282Lys1283Leu1284Arg1285Ile1286Asn1287Arg1288

Sequence conservation (by blast)

* References

[PubMed ID: 1350383] Monyer H, Sprengel R, Schoepfer R, Herb A, Higuchi M, Lomeli H, Burnashev N, Sakmann B, Seeburg PH, Heteromeric NMDA receptors: molecular and functional distinction of subtypes. Science. 1992 May 22;256(5060):1217-21.

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