XSB1259 : glycine transporter type-2 c form [Mus musculus]
[ CaMP Format ]
This entry is computationally expanded from SB0013
* Basic Information
| Organism | Mus musculus (house mouse) |
| Protein Names | Glycine transporter type-2 c form (Glycine transporter type-2 b form); glycine transporter type-2 c form; SubName: Full=Glycine transporter type-2 c form; Glycine transporter type-2 b form |
| Gene Names | GlyT2 |
| Gene Locus | Not available |
| GO Function | Not available |
| Entrez Protein |
Entrez Nucleotide |
Entrez Gene |
UniProt |
OMIM |
HGNC |
HPRD |
KEGG |
| BAD16783 |
N/A |
N/A |
Q761U8 |
N/A |
N/A |
N/A |
mmu: |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 174 aa
Average Mass: 17.599 kDa
Monoisotopic Mass: 17.589 kDa
2. Domain Information
Annotated Domains: interpro / pfam / smart / prosite
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
| TT_ORF2a 1. | 26 | 73 | -2.3 | 6.7 |
3. Sequence Information
Fasta Sequence: XSB1259.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
1 [sites]
Cleavage sites (±10aa)
[Site 1] NTPAVGWVNM148-SQSTVVLGTD
Met148 
Ser
 |
| P10 | P9 | P8 | P7 | P6 |
P5 | P4 | P3 | P2 | P1 |
| Asn139 | Thr140 | Pro141 | Ala142 | Val143 | Gly144 | Trp145 | Val146 | Asn147 | Met148 |
 |
| P1' | P2' | P3' | P4' | P5' |
P6' | P7' | P8' | P9' | P10' |
| Ser149 | Gln150 | Ser151 | Thr152 | Val153 | Val154 | Leu155 | Gly156 | Thr157 | Asp158 |
Sequence conservation (by blast)
Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
|
LRGPEEDANVSVGKGTLEHNNTPAVGWVNMSQSTVVLGTDGIASVLPGSVATTTIP
|
Summary
| # |
organism |
max score |
hits |
top seq |
| 1 |
Mus musculus |
115.00 |
7 |
glycine transporter type-2 c form |
| 2 |
Rattus norvegicus |
108.00 |
2 |
sodium dependent glycine type 2b transporter |
| 3 |
Macaca mulatta |
99.80 |
1 |
PREDICTED: solute carrier family 6 (neurotransmitt |
| 4 |
Homo sapiens |
98.20 |
6 |
Solute carrier family 6 (neurotransmitter transpor |
| 5 |
N/A |
98.20 |
1 |
S |
| 6 |
Pan troglodytes |
96.70 |
1 |
PREDICTED: solute carrier family 6 (neurotransmitt |
| 7 |
Bos taurus |
95.90 |
1 |
PREDICTED: similar to glycine transporter GLYT2 is |
| 8 |
Canis familiaris |
87.00 |
1 |
PREDICTED: similar to Sodium- and chloride-depende |
| 9 |
Monodelphis domestica |
78.20 |
1 |
PREDICTED: similar to glycine transporter GLYT2 |
| 10 |
Gallus gallus |
59.30 |
1 |
PREDICTED: similar to glycine transporter GLYT2 |
| 11 |
Danio rerio |
45.40 |
1 |
solute carrier family 6 (neurotransmitter transpor |
| 12 |
Tetraodon nigroviridis |
45.40 |
1 |
unnamed protein product |
Top-ranked sequences
| organism | matching |
|---|
| Mus musculus |
Query 119 LRGPEEDANVSVGKGTLEHNNTPAVGWVNM#SQSTVVLGTDGIASVLPGSVATTTIP 174
||||||||||||||||||||||||||||||#||||||||||||||||||||||||||
Query 119 LRGPEEDANVSVGKGTLEHNNTPAVGWVNM#SQSTVVLGTDGIASVLPGSVATTTIP 174
|
| Rattus norvegicus |
Query 119 LRGPEEDANVSVGKGTLEHNNTPAVGWVNM#SQSTVVLGTDGIASVLPGSVATTTIP 174
||||||| |||| |||||||||| ||||||#||||||||||||||||||||||||||
Sbjct 119 LRGPEEDENVSVAKGTLEHNNTPPVGWVNM#SQSTVVLGTDGIASVLPGSVATTTIP 174
|
| Macaca mulatta |
Query 119 LRGPEEDANVSVGKGTLEHNNTPAVGWVNM#SQSTVVLGTDGIASVLPGSVAT 170
||||| |||||||||||| |||||||||||#|||||||||||| |||||||||
Sbjct 169 LRGPEGDANVSVGKGTLERNNTPAVGWVNM#SQSTVVLGTDGITSVLPGSVAT 220
|
| Homo sapiens |
Query 119 LRGPEEDANVSVGKGTLEHNNTPAVGWVNM#SQSTVVLGTDGIASVLPGSVAT 170
||||| |||||||||||| |||| ||||||#|||||||||||| |||||||||
Sbjct 125 LRGPEGDANVSVGKGTLERNNTPVVGWVNM#SQSTVVLGTDGITSVLPGSVAT 176
|
| N/A |
Query 119 LRGPEEDANVSVGKGTLEHNNTPAVGWVNM#SQSTVVLGTDGIASVLPGSVAT 170
||||| |||||||||||| |||| ||||||#|||||||||||| |||||||||
Sbjct 125 LRGPEGDANVSVGKGTLERNNTPVVGWVNM#SQSTVVLGTDGITSVLPGSVAT 176
|
| Pan troglodytes |
Query 119 LRGPEEDANVSVGKGTLEHNNTPAVGWVNM#SQSTVVLGTDGIASVLPGSVAT 170
||||| |||||||||||| |||| |||||+#|||||||||||| |||||||||
Sbjct 125 LRGPEGDANVSVGKGTLERNNTPVVGWVNV#SQSTVVLGTDGITSVLPGSVAT 176
|
| Bos taurus |
Query 119 LRGPEEDANVSVGKGTLEHNNTPAVGWVNM#SQSTVVLGTDGIASVLPGSVAT 170
||| | |||||||||||| |||||||||||#|||||||||||| |||||||||
Sbjct 126 LRGLEGDANVSVGKGTLERNNTPAVGWVNM#SQSTVVLGTDGITSVLPGSVAT 177
|
| Canis familiaris |
Query 119 LRGPEEDANVSVGKGTLEHNNTPAVGWVNM#SQSTVVLGTDGIASVLPGSVAT 170
||||| || |||||||| |+||| |||||#||| |||||||| ||||||||+
Sbjct 232 LRGPEGDAAASVGKGTLERNSTPAGGWVNM#SQSAVVLGTDGITSVLPGSVAS 283
|
| Monodelphis domestica |
Query 119 LRGPE--EDANVSVGKGTLEHNNTPAVGWVNM#SQSTVVLGTDGIASVLPGSVATTTIP 174
||| |+ + | |||||| |+| | ||+||#|||||||||||| ||||||| ||+ |
Sbjct 122 LRGASVGEEESGSSGKGTLERNSTQAAGWINM#SQSTVVLGTDGITSVLPGSVTTTSTP 179
|
| Gallus gallus |
Query 119 LRGPEEDANVSVGKGTLEHNNTPAVGWVNM#SQSTVVLGTDGIASVLPGSV 168
|+ + ||| ++|| ||| || + || +#||||||||||| ||||| |
Sbjct 183 LQSTDGDANAALGKSTLEQNNAKST-WVTL#SQSTVVLGTDGNTSVLPGRV 231
|
| Danio rerio |
Query 127 NVSVGKGTLEHNNTPAVGWVNM#SQSTVVLGTDGIASVLPGSV 168
| | + ||||+ | +|#||+|++||||| |||||+|
Sbjct 110 NQSAVRIAAEHNNSTG-DWTSM#SQTTIILGTDGNTSVLPGTV 150
|
| Tetraodon nigroviridis |
Query 132 KGTLEHNNTPAVGWVNM#SQSTVVLGTDGIASVLPGSV 168
+ | | |||| | |#||+|++||||| || ||+|
Sbjct 54 RATAEQNNTPGT-WTAM#SQTTIILGTDGNTSVQPGTV 89
|
* References
[PubMed ID: 15081419] Ebihara S, Yamamoto T, Obata K, Yanagawa Y, Gene structure and alternative splicing of the mouse glycine transporter type-2. Biochem Biophys Res Commun. 2004 May 7;317(3):857-64.
