logo CaMPDB: Calpain for Modulatory Proteolysis Database

XSB1344 : hypothetical protein LOC641320 [Danio rerio]

[ CaMP Format ]

This entry is computationally expanded from SB0031

* Basic Information

OrganismDanio rerio (zebrafish)
Protein NamesZgc:123289; hypothetical protein LOC641320
Gene Nameszgc:123289
Gene LocusNot available
GO FunctionGO:0005524 - ATP binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005200 - structural constituent of cytoskeleton [Evidence IEA]
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
NP_001032193 NM_001037116 641320 Q3B727 N/A N/A N/A dre:641320

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 376 aa

Average Mass: 41.838 kDa

Monoisotopic Mass: 41.811 kDa

2. Domain Information

Annotated Domains: interpro / pfam / smart / prosite

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
Actin 1. 3376834.46.8e-248
--- cleavage 38 (inside Actin 3..376) ---

3. Sequence Information

Fasta Sequence: XSB1344.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Not Available.

* Cleavage Information

1 [sites]

Cleavage sites (±10aa)

[Site 1] RAVFPSIVGR38-PRHQGVMVGM

Arg38 Pro

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Arg29Ala30Val31Phe32Pro33Ser34Ile35Val36Gly37Arg38
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Pro39Arg40His41Gln42Gly43Val44Met45Val46Gly47Met48

Sequence conservation (by blast)

* References

[PubMed ID: 12477932] Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA, Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.