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XSB1585 : actin, alpha, cardiac muscle 1a [Danio rerio]

[ CaMP Format ]

This entry is computationally expanded from SB0071

* Basic Information

OrganismDanio rerio (zebrafish)
Protein NamesActin, alpha, cardiac muscle 1a; Actin, alpha, cardiac muscle like; actin; alpha; cardiac muscle 1a; alpha cardiac actin; cardiac muscle like; cardiac muscle 1 like
Gene Namesactc1a; DKEY-81B15.7-001; actcl; actin, alpha, cardiac muscle 1a
Gene Locus20; chromosome 20
GO FunctionNot available
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
NP_001001409 NM_001001409 408256 Q6IQR3 N/A N/A N/A dre:408256

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 377 aa

Average Mass: 41.975 kDa

Monoisotopic Mass: 41.948 kDa

2. Domain Information

Annotated Domains: interpro / pfam / smart / prosite

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
Actin 1. 4377841.74.2e-250
--- cleavage 39 (inside Actin 4..377) ---

3. Sequence Information

Fasta Sequence: XSB1585.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Not Available.

* Cleavage Information

1 [sites]

Cleavage sites (±10aa)

[Site 1] RAVFPSIVGR39-PRHQGVMVGM

Arg39 Pro

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Arg30Ala31Val32Phe33Pro34Ser35Ile36Val37Gly38Arg39
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Pro40Arg41His42Gln43Gly44Val45Met46Val47Gly48Met49

Sequence conservation (by blast)

* References

[PubMed ID: 18713863] Jurynec MJ, Xia R, Mackrill JJ, Gunther D, Crawford T, Flanigan KM, Abramson JJ, Howard MT, Grunwald DJ, Selenoprotein N is required for ryanodine receptor calcium release channel activity in human and zebrafish muscle. Proc Natl Acad Sci U S A. 2008 Aug 26;105(34):12485-90. Epub 2008 Aug 19.

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