Summary

Top-ranked sequences

Query   170 LWIQKGSHQMSLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYLRVAPPSSEFIGA  224
            ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||
Query   170 LWIQKGSHQMSLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYLRVAPPSSEFIGA  224

Query   170 LWIQKGSHQMSLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYLRVAPPSSEFIGA  224
            ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||
Query   170 LWIQKGSHQMSLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYLRVAPPSSEFIGA  224

Query   170 LWIQKGSHQMSLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYLRVAPPSSEFIGA  224
            ||||||||||||||||||||||||| ||||#|||||||||||||||||||||| ||
Sbjct  1155 LWIQKGSHQMSLDNPDYQQDFFPKEAKPNG#IFKGPTAENAEYLRVAPPSSEFSGA 1209

Query   171 WIQKGSHQMSLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYLRVAPPSSEFIGA  224
            | ||||||+||||||||||||||| ||||#|||| |||||||||||| |||||||
Sbjct   334 WAQKGSHQISLDNPDYQQDFFPKEAKPNG#IFKGSTAENAEYLRVAPQSSEFIGA  387

Query   171 WIQKGSHQMSLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYLRVAPPSSEFIGA  224
            | ||||||+||||||||||||||| ||||#|||| |||||||||||| |||||||
Sbjct  1096 WAQKGSHQISLDNPDYQQDFFPKEAKPNG#IFKGSTAENAEYLRVAPQSSEFIGA 1149

Query   171 WIQKGSHQMSLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYLRVAPPSSEFIGA  224
            | ||||||+||||||||||||||| ||||#|||| |||||||||||| |||||||
Sbjct  1157 WAQKGSHQISLDNPDYQQDFFPKEAKPNG#IFKGSTAENAEYLRVAPQSSEFIGA 1210

Query   170 LWIQKGSHQMSLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYLRVAPPSSEFIG  223
            || |||+||+||||||||||||||| | ||#||||| ||||||||||||||||||
Sbjct    51 LWAQKGNHQISLDNPDYQQDFFPKEAKSNG#IFKGPAAENAEYLRVAPPSSEFIG  104

Query   170 LWIQKGSHQMSLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYLRVAPPSSEFIGA  224
            || |+ +||+||||||||||||||| | ||#||||| ||||+||||||||||||||
Sbjct  1541 LWTQEANHQISLDNPDYQQDFFPKEAKSNG#IFKGPAAENADYLRVAPPSSEFIGA 1595

Query   170 LWIQKGSHQMSLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYLRVAPPSSEFIGA  224
            || |||||| ||||||||| ||||| | ||#||||| |||||||| ||  |+| ||
Sbjct  1131 LWAQKGSHQFSLDNPDYQQAFFPKEAKSNG#IFKGPAAENAEYLRAAPAGSDFTGA 1185

Query   171 WIQKGSHQMSLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYLRVAPPSSEFIGA  224
            | | ||||++|||||||| ||||| | ||#| ||| |||||||| || ||+  ||
Sbjct  1151 WAQTGSHQINLDNPDYQQAFFPKEAKSNG#ICKGPAAENAEYLRAAPASSDLTGA 1204

Query   171 WIQKGSHQMSLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYLRVAPPSSEFIGA  224
            |     | ++||||||||||||+| ||||#+|| | ||| ||||||   |||| |
Sbjct  1184 WNPTAKHPINLDNPDYQQDFFPQEAKPNG#VFKVPAAENPEYLRVAAQQSEFIQA 1237

Query   170 LWIQKGSHQMSLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYLRVAPPS  218
            +| || + |++|||||||||||||| | ||# || | |+| ||| +|| |
Sbjct   739 IWDQKANIQINLDNPDYQQDFFPKEPKTNG#HFKIPAAQNPEYLGLAPVS  787

Query   173 QKGSHQMSLDNPDYQQDFFPK-ETKPNG#IFKGPTAENAEYLRV  214
            || + | |+||||||||| |  +|  ||#    | ||| ||  |
Sbjct  1054 QKYAPQNSIDNPDYQQDFTPTFKTHTNG#HI--PAAENTEYTSV 1094

Query   178 QMSLDNPDYQQDFFPK-ETKPNG#IFKGPTAENAEYL  212
            | |+||||||||| |  +|  ||#    | ||| |||
Sbjct  1173 QNSMDNPDYQQDFTPTFKTHTNG#HI--PAAENVEYL 1206

Query   180 SLDNPDYQQDFFPKETKPNG#IFKGPTAENAEYL  212
            |+||||||||| | | | + #    | |+| ||+
Sbjct  1154 SMDNPDYQQDFCPLELKTHT#NGHLPAAQNQEYM 1186

[PubMed ID: 11042159] ... Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M, Konno H, Okazaki Y, Muramatsu M, Hayashizaki Y, Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Genome Res. 2000 Oct;10(10):1617-30.

[PubMed ID: 11076861] ... Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K, Togawa Y, RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Genome Res. 2000 Nov;10(11):1757-71.

[PubMed ID: 11217851] ... Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W, Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F, Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M, Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N, Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C, Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA, Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J, Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF, Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L, Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S, Hayashizaki Y, Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90.

[PubMed ID: 12466851] ... Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002 Dec 5;420(6915):563-73.

[PubMed ID: 16141072] ... Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y, The transcriptional landscape of the mammalian genome. Science. 2005 Sep 2;309(5740):1559-63.

[PubMed ID: 16141073] ... Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C, Antisense transcription in the mammalian transcriptome. Science. 2005 Sep 2;309(5740):1564-6.