XSB1965 : unnamed protein product [Mus musculus]
[ CaMP Format ]
This entry is computationally expanded from SB0064
* Basic Information
| Organism | Mus musculus (house mouse) |
| Protein Names | Putative uncharacterized protein |
| Gene Names | Fos |
| Gene Locus | Not available |
| GO Function | Not available |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 380 aa
Average Mass: 40.778 kDa
Monoisotopic Mass: 40.753 kDa
2. Domain Information
Annotated Domains: interpro / pfam / smart / prosite
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
|---|---|---|---|---|
| --- cleavage 90 --- | ||||
| bZIP_1 1. | 135 | 198 | 37.7 | 4.7e-08 |
| Keratin_B2 1. | 216 | 369 | -104.1 | 8.9 |
3. Sequence Information
Fasta Sequence: XSB1965.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
1 [sites]
Cleavage sites (±10aa)
[Site 1] LVSSVAPSQT90-RAPHPYGLPT
Thr90 
Arg
 |
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Leu81 | Val82 | Ser83 | Ser84 | Val85 | Ala86 | Pro87 | Ser88 | Gln89 | Thr90 |
 |
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Arg91 | Ala92 | Pro93 | His94 | Pro95 | Tyr96 | Gly97 | Leu98 | Pro99 | Thr100 |
Sequence conservation (by blast)
Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| IPTVTAISTSPDLQWLVQPTLVSSVAPSQTRAPHPYGLPTQSAGAYARAGMVKTVSGGRA |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | Mus musculus | 122.00 | 8 | unnamed protein product |
| 2 | N/A | 120.00 | 7 | F |
| 3 | Murine osteosarcoma virus | 120.00 | 2 | FOS |
| 4 | Murine sarcoma virus | 117.00 | 1 | FOS_MSVFB p55-v-fos-transforming protein emb |
| 5 | Phodopus roborowski | 116.00 | 3 | FOS_PHORO Proto-oncogene protein c-fos (Cellular o |
| 6 | Mesocricetus auratus | 116.00 | 1 | FOS_MESAU Proto-oncogene protein c-fos (Cellular o |
| 7 | Rattus norvegicus | 115.00 | 5 | FBJ murine osteosarcoma viral oncogene homolog |
| 8 | Cricetulus griseus | 115.00 | 1 | FOS_CRIGR Proto-oncogene protein c-fos (Cellular o |
| 9 | Canis familiaris | 114.00 | 8 | PREDICTED: similar to Proto-oncogene protein c-fos |
| 10 | Phodopus sungorus | 114.00 | 3 | proto-oncogene protein c-FOS |
| 11 | Phodopus campbelli | 114.00 | 2 | FOS_PHOCM Proto-oncogene protein c-fos (Cellular o |
| 12 | Sus scrofa | 113.00 | 1 | c-Fos protein |
| 13 | Bos taurus | 112.00 | 3 | murine FBJ osteosarcoma viral (v-fos) oncogene hom |
| 14 | Pan troglodytes | 110.00 | 4 | v-fos FBJ murine osteosarcoma viral oncogene homol |
| 15 | swine, anterior pituitary, Peptide, 380 aa | 110.00 | 1 | FOS_PIG Proto-oncogene protein c-fos (Cellular onc |
| 16 | Spermophilus tridecemlineatus | 110.00 | 1 | c-fos |
| 17 | Homo sapiens | 108.00 | 7 | v-fos FBJ murine osteosarcoma viral oncogene homol |
| 18 | synthetic construct | 108.00 | 4 | v-fos FBJ murine osteosarcoma viral oncogene-like |
| 19 | Macaca mulatta | 108.00 | 4 | hypothetical protein LOC702077 |
| 20 | Felis catus | 108.00 | 3 | v-fos FBJ murine osteosarcoma viral oncogene homol |
| 21 | Ateles belzebuth chamek | 108.00 | 1 | similar to murine osteosarcoma viral oncogene |
| 22 | Monodelphis domestica | 94.00 | 3 | PREDICTED: similar to c-Fos protein |
| 23 | Gallus gallus | 75.90 | 2 | v-fos FBJ murine osteosarcoma viral oncogene homol |
| 24 | Xenopus laevis | 75.50 | 1 | MGC80305 protein |
| 25 | Coturnix coturnix | 75.50 | 1 | AF364329_1 c-fos proto-oncogene |
| 26 | Xenopus tropicalis | 75.10 | 1 | FBJ murine osteosarcoma viral oncogene homolog |
| 27 | Eublepharis macularius | 60.10 | 1 | fos proto-oncogene protein |
| 28 | Danio rerio | 57.00 | 11 | hypothetical protein LOC100009629 |
| 29 | Canis lupus familiaris | 57.00 | 1 | FBJ murine osteosarcoma viral oncogene homolog B |
| 30 | Dicentrarchus labrax | 55.80 | 1 | proto-oncogene protein c-Fos |
| 31 | Tetraodon nigroviridis | 55.50 | 5 | unnamed protein product |
| 32 | Rivulus marmoratus | 53.90 | 1 | c-fos |
| 33 | Oncorhynchus masou | 53.90 | 1 | c-Fos protein |
| 34 | Taenia crassiceps | 53.10 | 1 | c-fos |
| 35 | Taenia solium | 50.80 | 1 | c-fos |
| 36 | Takifugu rubripes | 49.70 | 5 | fra2 protein |
| 37 | Cyprinus carpio | 48.90 | 1 | FOS_CYPCA Proto-oncogene protein c-fos (Cellular o |
| 38 | Expression vector pGH/F2.2-327 | 48.90 | 1 | GSTmFra2/2-327 |
| 39 | Expression vector pGH/F2.2-242 | 48.90 | 1 | GSTmFra2/2-242 |
| 40 | Expression vector pGH/F2.2-163 | 48.90 | 1 | GSTmFra2/2-163 |
| 41 | Ctenopharyngodon idella | 48.50 | 1 | AF380155_1 c-Fos |
| 42 | Carassius auratus | 46.60 | 2 | c-fos |
| 43 | Oncorhynchus nerka | 43.10 | 1 | c-Fos type1 protein |
| 44 | Mus spretus | 42.40 | 1 | c-fos oncogene |
Top-ranked sequences
| organism | matching |
|---|---|
| Mus musculus | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 |
| N/A | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||| ||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 37 IPTETAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 96 |
| Murine osteosarcoma virus | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||| ||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 39 IPTETAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 98 |
| Murine sarcoma virus | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 |||||| |||||||||||||||||||||||#||||||||||||||||||| |||||||||| Sbjct 61 IPTVTATSTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAEMVKTVSGGRA 120 |
| Phodopus roborowski | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||||||||||||||#|||||||+|| | |||+||||||||||||| Sbjct 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGVPTPSTGAYSRAGMVKTVSGGRA 120 |
| Mesocricetus auratus | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||||||||||||||#|||||||+|| | |||+||||||||||||| Sbjct 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGVPTPSTGAYSRAGMVKTVSGGRA 120 |
| Rattus norvegicus | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||||||||||||||#|||||||||| | |||||||+|||+||||| Sbjct 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTPSTGAYARAGVVKTMSGGRA 120 |
| Cricetulus griseus | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||||||||||||||#|||||||+|| |||||+|| |||||||||| Sbjct 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGVPTPSAGAYSRAAMVKTVSGGRA 120 |
| Canis familiaris | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||||||||||||||#|||||||+|| |||||+|||+|||++|||| Sbjct 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGVPTPSAGAYSRAGVVKTMTGGRA 120 |
| Phodopus sungorus | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||||||||||||||#|||||||+|| |||+||||||||||||| Sbjct 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGVPTPPTGAYSRAGMVKTVSGGRA 120 |
| Phodopus campbelli | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||||||||||||||#|||||||+|| |||+||||||||||||| Sbjct 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGVPTPPTGAYSRAGMVKTVSGGRA 120 |
| Sus scrofa | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||||||||||||||#|||||||+|| |||||+|||+|||+ |||| Sbjct 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGVPTPSAGAYSRAGVVKTMPGGRA 120 |
| Bos taurus | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||||||||||||||#|||||||+|| |||||+|||++||++|||| Sbjct 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGVPTPSAGAYSRAGVMKTMTGGRA 120 |
| Pan troglodytes | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||| ||||||||||#|||||+|+|| |||||+|||+|||++|||| Sbjct 61 IPTVTAISTSPDLQWLVQPALVSSVAPSQT#RAPHPFGVPTPSAGAYSRAGVVKTMTGGRA 120 |
| swine, anterior pituitary, Peptide, 380 aa | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 |||||||| |||||||||||||||||||||#|||||||+|| |||||+||| |||+ |||| Sbjct 61 IPTVTAISISPDLQWLVQPTLVSSVAPSQT#RAPHPYGVPTPSAGAYSRAGAVKTMPGGRA 120 |
| Spermophilus tridecemlineatus | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||||||||||||||#|||||||+|| | |||+||| ||++|||| Sbjct 52 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGVPTPSTGAYSRAGAAKTMTGGRA 111 |
| Homo sapiens | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||| ||||||||||#|||||+|+| |||||+|||+|||++|||| Sbjct 61 IPTVTAISTSPDLQWLVQPALVSSVAPSQT#RAPHPFGVPAPSAGAYSRAGVVKTMTGGRA 120 |
| synthetic construct | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||| ||||||||||#|||||+|+| |||||+|||+|||++|||| Sbjct 61 IPTVTAISTSPDLQWLVQPALVSSVAPSQT#RAPHPFGVPAPSAGAYSRAGVVKTMTGGRA 120 |
| Macaca mulatta | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 ||||||||||||||||||| ||||||||||#|||||+|+|| |||||+|||+|||++| || Sbjct 61 IPTVTAISTSPDLQWLVQPALVSSVAPSQT#RAPHPFGVPTPSAGAYSRAGIVKTMTGSRA 120 |
| Felis catus | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTV-SGGR 119 ||||||||||||||||||||||||||||||#|||||||+| |||||+|||+|||| +||| Sbjct 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGVPAPSAGAYSRAGVVKTVTAGGR 120 Query 120 A 120 | Query 120 A 120 |
| Ateles belzebuth chamek | Query 62 PTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 |||||||||||||||||| ||||||||||#|||||+|+|| |||||+|||+|||++|||| Sbjct 1 PTVTAISTSPDLQWLVQPALVSSVAPSQT#RAPHPFGVPTPSAGAYSRAGVVKTMTGGRA 59 |
| Monodelphis domestica | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGR 119 |||||||||||||||||||||+||||||||#| ||||+ || |+|||+||| +||| Sbjct 61 IPTVTAISTSPDLQWLVQPTLISSVAPSQT#RV-HPYGVSAPSAAVYSRAGIVKTTAGGR 118 |
| Gallus gallus | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQS-AGAYARAGMVKTVSG 117 +||||||||||||||||||||+||||||| #| ||||+| + ||+| ++| | Sbjct 61 VPTVTAISTSPDLQWLVQPTLISSVAPSQN#RG-HPYGVPAPAPPAAYSRPAVLKAPGG 117 |
| Xenopus laevis | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSG 117 +||||||||||||||||||||+|||||||+#|| |||| | |+|+ +|| +| Sbjct 59 VPTVTAISTSPDLQWLVQPTLISSVAPSQS#RA-HPYG----STSVYSRSAVVKGSTG 110 |
| Coturnix coturnix | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQS-AGAYARAGMVKTVSG 117 +||||||||||||||||||||+||||||| #| ||||+| + ||+| ++| | Sbjct 61 VPTVTAISTSPDLQWLVQPTLISSVAPSQN#RG-HPYGVPPPAPPAAYSRPAVLKAPGG 117 |
| Xenopus tropicalis | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSG 117 +||||||||||||||||||||+|||||||+#|| |||| | ||+|+ ++| +| Sbjct 59 VPTVTAISTSPDLQWLVQPTLISSVAPSQS#RA-HPYG----STPAYSRSSVMKGSAG 110 |
| Eublepharis macularius | Query 71 PDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKT 114 ||||||||| +||||||| #| ||| || | ||+|||+||| Sbjct 2 PDLQWLVQP--ISSVAPSQN#RT-HPYSLPAPSTTAYSRAGIVKT 42 |
| Danio rerio | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSA------GAYARAGMVKT 114 |||+ ||+|| ||||+||||+++|++ +#| |||||| | | | |++++ Sbjct 48 IPTINAITTSQDLQWMVQPTVITSMSNPYS#R-PHPYGLSVSSGPSLLGHTALTRPGVIRS 106 Query 115 VSGGR 119 + | Sbjct 107 IGDAR 111 |
| Canis lupus familiaris | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#R-------APHPYGLPTQSAGAYARAGMVK 113 +||||||+|| ||||||||||+||+| || #+ | || +| | |+ || Sbjct 55 VPTVTAITTSQDLQWLVQPTLISSMAQSQG#QPLASQPPAVDPYDMPGTS---YSTPGMSG 111 Query 114 TVSGG 118 ||| Sbjct 112 YSSGG 116 |
| Dicentrarchus labrax | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGM 111 |||||||||||||||+||| |+|||||| # ||| + + ||+| | Sbjct 58 IPTVTAISTSPDLQWMVQP-LISSVAPS--#HRAHPYS--SSPSPAYSRPAM 103 |
| Tetraodon nigroviridis | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYG---------LPTQSAGAYARAGM 111 +||||||||||||||+||| |||||||| #| ||| + + ++ |+|+ | Sbjct 56 VPTVTAISTSPDLQWMVQP-LVSSVAPS--#RRAHPYSPSPSYKRTVMRSAASKAHAKRGR 112 Query 112 VK 113 |+ Sbjct 113 VE 114 |
| Rivulus marmoratus | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVS 116 |||||||||||||||+||| |+| |||| # ||| + + || |+ | | Sbjct 58 IPTVTAISTSPDLQWMVQP-LISLVAPS--#HRAHPYS--SSPSPAYPRSAMRSAAS 108 |
| Oncorhynchus masou | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGR 119 |||||||| |||+|||||| +|||||| # |+ || |+|| | | || Sbjct 60 IPTVTAISASPDMQWLVQP--ISSVAPSYR#AHPYSASPPT-----YSRAMRNKGHSSGR 111 |
| Taenia crassiceps | Query 89 QT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 +|#||||||||| + |||||||+|||+||||| Sbjct 97 KT#RAPHPYGLPP-ATGAYARAGVVKTMSGGRA 127 |
| Taenia solium | Query 89 QT#RAPHPYGLPTQSAGAYARAGMVKTVSGGRA 120 +|#||||||||| + ||||||+|||+||||| Sbjct 97 KT#RAPHPYGLPP-TGNAYARAGVVKTMSGGRA 127 |
| Takifugu rubripes | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSA------GAYARAGMVKT 114 |||+ ||+|| ||||+||||+++|++ +#|+ |||| + || |++++ Sbjct 57 IPTINAITTSQDLQWMVQPTVITSMSSPYS#RS-HPYGHHLTNGPGILGHNPLARPGVIRS 115 Query 115 VSGGR 119 + | Sbjct 116 IGDTR 120 |
| Cyprinus carpio | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RA----PHPY 96 +|||||||+ |||||+||| +||||||| # | |+|| Sbjct 48 VPTVTAISSCPDLQWMVQP-MVSSVAPSNG#GARSYNPNPY 86 |
| Expression vector pGH/F2.2-327 | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYG-LPTQSA----GAYARAGMVKTV 115 |||+ ||+|| ||||+||||+++|++ #|+ ||| || ++ | | |++||+ Sbjct 290 IPTINAITTSQDLQWMVQPTVITSMSNPYP#RS-HPYSPLPGLASVPGHMALPRPGVIKTI 348 |
| Expression vector pGH/F2.2-242 | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYG-LPTQSA----GAYARAGMVKTV 115 |||+ ||+|| ||||+||||+++|++ #|+ ||| || ++ | | |++||+ Sbjct 290 IPTINAITTSQDLQWMVQPTVITSMSNPYP#RS-HPYSPLPGLASVPGHMALPRPGVIKTI 348 |
| Expression vector pGH/F2.2-163 | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYG-LPTQSA----GAYARAGMVKTV 115 |||+ ||+|| ||||+||||+++|++ #|+ ||| || ++ | | |++||+ Sbjct 290 IPTINAITTSQDLQWMVQPTVITSMSNPYP#RS-HPYSPLPGLASVPGHMALPRPGVIKTI 348 |
| Ctenopharyngodon idella | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RA----PHPY 96 +|||||||+ |||||+||| ++|||||| # | |+|| Sbjct 48 VPTVTAISSCPDLQWMVQP-MISSVAPSNG#GARSYNPNPY 86 |
| Carassius auratus | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RA----PHPY 96 +| |||||+ |||||+||| +||||||| # | | || Sbjct 48 VPAVTAISSCPDLQWMVQP-MVSSVAPSNG#AARSYNPDPY 86 |
| Oncorhynchus nerka | Query 61 IPTVTAISTSPDLQWLVQPTLVSSVAPSQT#RAPHPYGLPTQSAGAYARAGMVKTVSGGR 119 |||||||| +|+| ||| | +||||| # |+ || | || | | || Sbjct 64 IPTVTAISATPNLHWLVHP--LSSVAPPYK#AHPYLATPPT-----YTRAMRNKGHSSGR 115 |
| Mus spretus | Query 71 PDLQWLVQPTLVSSVAPSQ 89 ||||||||||||||||||| Query 71 PDLQWLVQPTLVSSVAPSQ 89 |
* References
[PubMed ID: 10349636] Carninci P, Hayashizaki Y, High-efficiency full-length cDNA cloning. Methods Enzymol. 1999;303:19-44.
[PubMed ID: 11042159] ... Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M, Konno H, Okazaki Y, Muramatsu M, Hayashizaki Y, Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Genome Res. 2000 Oct;10(10):1617-30.
[PubMed ID: 11076861] ... Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K, Togawa Y, RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Genome Res. 2000 Nov;10(11):1757-71.
[PubMed ID: 11217851] ... Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W, Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F, Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M, Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N, Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C, Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA, Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J, Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF, Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L, Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S, Hayashizaki Y, Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90.
[PubMed ID: 12466851] ... Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002 Dec 5;420(6915):563-73.
[PubMed ID: 16141072] ... Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y, The transcriptional landscape of the mammalian genome. Science. 2005 Sep 2;309(5740):1559-63.
[PubMed ID: 16141073] ... Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C, Antisense transcription in the mammalian transcriptome. Science. 2005 Sep 2;309(5740):1564-6.