XSB2039 : unnamed protein product [Mus musculus]
[ CaMP Format ]
This entry is computationally expanded from SB0056
* Basic Information
| Organism | Mus musculus (house mouse) |
| Protein Names | Putative uncharacterized protein |
| Gene Names | Atp2b1 |
| Gene Locus | Not available |
| GO Function | Not available |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 290 aa
Average Mass: 32.730 kDa
Monoisotopic Mass: 32.710 kDa
2. Domain Information
Annotated Domains: interpro / pfam / smart / prosite
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
|---|---|---|---|---|
| Cation_ATPase_C 1. | 1 | 131 | 26.5 | 3.6e-05 |
3. Sequence Information
Fasta Sequence: XSB2039.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
1 [sites]
Cleavage sites (±10aa)
[Site 1] EIDHAERELR171-RGQILWFRGL
Arg171 
Arg
 |
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Glu162 | Ile163 | Asp164 | His165 | Ala166 | Glu167 | Arg168 | Glu169 | Leu170 | Arg171 |
 |
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Arg172 | Gly173 | Gln174 | Ile175 | Leu176 | Trp177 | Phe178 | Arg179 | Gly180 | Leu181 |
Sequence conservation (by blast)
Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| AGHGTQKEEIPEEELAEDVEEIDHAERELRRGQILWFRGLNRIQTQIRVVNAFRSSLYEG |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | Canis familiaris | 91.30 | 103 | PREDICTED: similar to plasma membrane calcium ATPa |
| 2 | N/A | 91.30 | 40 | B |
| 3 | Homo sapiens | 91.30 | 27 | plasma membrane calcium-ATPase isoform 1b |
| 4 | Bos taurus | 91.30 | 12 | plasma membrane calcium ATPase 1 |
| 5 | Mus musculus | 91.30 | 12 | unnamed protein product |
| 6 | Gallus gallus | 91.30 | 9 | AT2B1_CHICK Plasma membrane calcium-transporting A |
| 7 | Macaca mulatta | 91.30 | 7 | PREDICTED: similar to plasma membrane calcium ATPa |
| 8 | Monodelphis domestica | 91.30 | 3 | PREDICTED: similar to plasma membrane calcium ATPa |
| 9 | Sus scrofa | 91.30 | 2 | plasma membrane calcium ATPase 1 |
| 10 | Rana catesbeiana | 89.40 | 2 | PMCA1bx |
| 11 | Tetraodon nigroviridis | 84.30 | 4 | unnamed protein product |
| 12 | Danio rerio | 84.30 | 4 | PREDICTED: hypothetical protein, partial |
| 13 | Rattus norvegicus | 84.00 | 6 | PREDICTED: similar to plasma membrane calcium ATPa |
| 14 | Pan troglodytes | 82.00 | 11 | PREDICTED: plasma membrane calcium ATPase 2 isofor |
| 15 | Oryctolagus cuniculus | 80.90 | 1 | Ca2+/Mg2+ ATPase |
| 16 | Pongo pygmaeus | 75.90 | 1 | hypothetical protein |
| 17 | synthetic construct | 72.80 | 2 | hypothetical protein |
| 18 | rats, ROS 17/2.8 osteosarcoma cells, Peptide Partial, 123 aa | 71.20 | 1 | plasma membrane Ca(2+)-ATPase PMCA1b isoform {alte |
| 19 | Procambarus clarkii | 70.90 | 1 | plasma membrane calcium ATPase PMCA3 |
| 20 | Xenopus laevis | 70.10 | 1 | ATPase, Ca++ transporting, plasma membrane 3 |
Top-ranked sequences
| organism | matching |
|---|---|
| Canis familiaris | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 ||||||| |||||||||#|||||||||||||||||||||||||||||| Sbjct 91 AGHGTQKEEIPEEELAEDVEEIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 150 |
| N/A | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 ||||||| |||||||||#|||||||||||||||||||||||||||||| Sbjct 16 AGHGTQKEEIPEEELAEDVEEIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 75 |
| Homo sapiens | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 ||||||| |||||||||#|||||||||||||||||||||||||||||| Sbjct 88 AGHGTQKEEIPEEELAEDVEEIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 147 |
| Bos taurus | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 ||||||| |||||||||#|||||||||||||||||||||||||||||| Sbjct 1072 AGHGTQKEEIPEEELAEDVEEIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 1131 |
| Mus musculus | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 ||||||| |||||||||#|||||||||||||||||||||||||||||| Sbjct 142 AGHGTQKEEIPEEELAEDVEEIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 |
| Gallus gallus | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 ||||||| |||||||||#|||||||||||||||||||||||||||||| Sbjct 66 AGHGTQKEEIPEEELAEDVEEIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 125 |
| Macaca mulatta | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 ||||||| |||||||||#|||||||||||||||||||||||||||||| Sbjct 955 AGHGTQKEEIPEEELAEDVEEIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 1014 |
| Monodelphis domestica | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 ||||||| |||||||||#|||||||||||||||||||||||||||||| Sbjct 1059 AGHGTQKEEIPEEELAEDVEEIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 1118 |
| Sus scrofa | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 ||||||| |||||||||#|||||||||||||||||||||||||||||| Sbjct 1072 AGHGTQKEEIPEEELAEDVEEIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 1131 |
| Rana catesbeiana | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 ||||| | |||||||||#|||||||||||||||||||||||||||||| Sbjct 1066 AGHGTHKDEIPEEELAEDAEEIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 1125 |
| Tetraodon nigroviridis | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 || ||| |||||||||#|||||||||||||||||||||||||||||| Sbjct 288 AGQLTQKDELPEEDVNEENEEIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 347 |
| Danio rerio | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 || ||| |||||||||#|||||||||||||||||||||||||||||| Sbjct 293 AGQLTQKDEMPEEEMNEDQEEIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 352 |
| Rattus norvegicus | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 |||| | |||||||||#|||||||||||||||||||| ||||||||| Sbjct 1069 AGHGPGKDEMTDEELAEGEEEIDHAERELR#RGQILWFRGLNRIQTQIRVVKAFRSSLYEG 1128 |
| Pan troglodytes | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 || ||| |||||||||#|||||||||||||||||||| ||||||||| Sbjct 1042 AGRLTQKEEIPEEELNEDVEEIDHAERELR#RGQILWFRGLNRIQTQIRVVKAFRSSLYEG 1101 |
| Oryctolagus cuniculus | Query 144 HGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 ||||| | |||||||#| |||||||||||||||||||||||||||| Sbjct 1074 HGTQKREIGEEELAEDVEEIVHAERELR#RWQILWFRGLNRIQTQIRVVNAFRSSLYEG 1131 |
| Pongo pygmaeus | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRS 196 ||||||| |||||||||#||||||||||||||||+ |||||+| Sbjct 150 AGHGTQKEEIPEEELAEDVEEIDHAERELR#RGQILWFRGLNRIQTQMDVVNAFQS 204 |
| synthetic construct | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYE 200 ||||| | ||||| |||#|||||||||||||||||+|| || |||+| Sbjct 1060 AGHGTTKEEITKDAEGLDE--IDHAEMELR#RGQILWFRGLNRIQTQIKVVKAFHSSLHE 1116 |
| rats, ROS 17/2.8 osteosarcoma cells, Peptide Partial, 123 aa | Query 168 RELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 ||||#|||||||||||||||||||||||||||||| Query 168 RELR#RGQILWFRGLNRIQTQIRVVNAFRSSLYEG 201 |
| Procambarus clarkii | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRS 196 ||| +| |||||||||#||||||||||||||||| |||||+| Sbjct 1098 AGHEHRKDEMNAEDLNEGQEEIDHAERELR#RGQILWFRGLNRIQTQIEVVNAFKS 1152 |
| Xenopus laevis | Query 142 AGHGTQKXXXXXXXXXXXXXXIDHAERELR#RGQILWFRGLNRIQTQIRVVNAFRS 196 ||+ ||| |||||||||#||||||||||||||||| ||| |+| Sbjct 1098 AGNLTQKEENQEEELNEDAEEIDHAERELR#RGQILWFRGLNRIQTQIEVVNTFKS 1152 |
* References
[PubMed ID: 10349636] Carninci P, Hayashizaki Y, High-efficiency full-length cDNA cloning. Methods Enzymol. 1999;303:19-44.
[PubMed ID: 11042159] ... Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M, Konno H, Okazaki Y, Muramatsu M, Hayashizaki Y, Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Genome Res. 2000 Oct;10(10):1617-30.
[PubMed ID: 11076861] ... Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K, Togawa Y, RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Genome Res. 2000 Nov;10(11):1757-71.
[PubMed ID: 11217851] ... Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W, Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F, Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M, Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N, Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C, Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA, Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J, Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF, Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L, Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S, Hayashizaki Y, Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90.
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[PubMed ID: 16141072] ... Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y, The transcriptional landscape of the mammalian genome. Science. 2005 Sep 2;309(5740):1559-63.
[PubMed ID: 16141073] ... Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C, Antisense transcription in the mammalian transcriptome. Science. 2005 Sep 2;309(5740):1564-6.