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XSB2196 : Integrin beta-1 precursor [Salmo salar]

[ CaMP Format ]

This entry is computationally expanded from SB0063

* Basic Information

OrganismSalmo salar (Atlantic salmon)
Protein NamesIntegrin beta-1; Integrin beta-1 precursor
Gene NamesITB1
Gene LocusNot available
GO FunctionNot available
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
ACN58712 N/A N/A C0PUP8_SALSA N/A N/A N/A N/A

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 360 aa

Average Mass: 40.002 kDa

Monoisotopic Mass: 39.975 kDa

2. Domain Information

Annotated Domains: interpro / pfam / smart / prosite

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
EGF_2 1. 286210.80.17
EGF_2 2. 7811517.00.032
EGF_2 3. 12215227.17.4e-05
EGF_2 4. 16119237.45.7e-08
Integrin_B_tail 1. 202290137.34.9e-38
Integrin_b_cyt 1. 314359112.31.6e-30
--- cleavage 353 (inside Integrin_b_cyt 314..359) ---
--- cleavage 339 (inside Integrin_b_cyt 314..359) ---
--- cleavage 351 (inside Integrin_b_cyt 314..359) ---
--- cleavage 340 (inside Integrin_b_cyt 314..359) ---

3. Sequence Information

Fasta Sequence: XSB2196.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Not Available.

* Cleavage Information

4 [sites]

Cleavage sites (±10aa)

[Site 1] IYKSAVTTVV353-NPKYEGK

Val353 Asn

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Ile344Tyr345Lys346Ser347Ala348Val349Thr350Thr351Val352Val353
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Asn354Pro355Lys356Tyr357Glu358Gly359Lys360---

Sequence conservation (by blast)

[Site 2] KEKMNAKWDT339-GENPIYKSAV

Thr339 Gly

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Lys330Glu331Lys332Met333Asn334Ala335Lys336Trp337Asp338Thr339
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Gly340Glu341Asn342Pro343Ile344Tyr345Lys346Ser347Ala348Val349

Sequence conservation (by blast)

[Site 3] NPIYKSAVTT351-VVNPKYEGK

Thr351 Val

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Asn342Pro343Ile344Tyr345Lys346Ser347Ala348Val349Thr350Thr351
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Val352Val353Asn354Pro355Lys356Tyr357Glu358Gly359Lys360-

Sequence conservation (by blast)

[Site 4] EKMNAKWDTG340-ENPIYKSAVT

Gly340 Glu

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Glu331Lys332Met333Asn334Ala335Lys336Trp337Asp338Thr339Gly340
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Glu341Asn342Pro343Ile344Tyr345Lys346Ser347Ala348Val349Thr350

Sequence conservation (by blast)

* References

None.