logo CaMPDB: Calpain for Modulatory Proteolysis Database

XSB2198 : Integrin beta-1 precursor [Salmo salar]

[ CaMP Format ]

This entry is computationally expanded from SB0063

* Basic Information

OrganismSalmo salar (Atlantic salmon)
Protein NamesIntegrin beta-1; Integrin beta-1 precursor
Gene NamesITB1
Gene LocusNot available
GO FunctionNot available
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
ACN10531 N/A N/A C0H912_SALSA N/A N/A N/A N/A

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 800 aa

Average Mass: 88.572 kDa

Monoisotopic Mass: 88.514 kDa

2. Domain Information

Annotated Domains: interpro / pfam / smart / prosite

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
Integrin_beta 1. 344651032.00
EGF_2 1. 46750113.30.087
EGF_2 2. 51755417.50.028
EGF_2 3. 56159126.20.00014
EGF_2 4. 60063137.17e-08
Integrin_B_tail 1. 641730131.23.2e-36
Integrin_b_cyt 1. 754799112.31.6e-30
--- cleavage 793 (inside Integrin_b_cyt 754..799) ---
--- cleavage 779 (inside Integrin_b_cyt 754..799) ---
--- cleavage 791 (inside Integrin_b_cyt 754..799) ---
--- cleavage 780 (inside Integrin_b_cyt 754..799) ---

3. Sequence Information

Fasta Sequence: XSB2198.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Not Available.

* Cleavage Information

4 [sites]

Cleavage sites (±10aa)

[Site 1] IYKSAVTTVV793-NPKYEGK

Val793 Asn

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Ile784Tyr785Lys786Ser787Ala788Val789Thr790Thr791Val792Val793
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Asn794Pro795Lys796Tyr797Glu798Gly799Lys800---

Sequence conservation (by blast)

[Site 2] KEKMNAKWDT779-GENPIYKSAV

Thr779 Gly

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Lys770Glu771Lys772Met773Asn774Ala775Lys776Trp777Asp778Thr779
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Gly780Glu781Asn782Pro783Ile784Tyr785Lys786Ser787Ala788Val789

Sequence conservation (by blast)

[Site 3] NPIYKSAVTT791-VVNPKYEGK

Thr791 Val

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Asn782Pro783Ile784Tyr785Lys786Ser787Ala788Val789Thr790Thr791
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Val792Val793Asn794Pro795Lys796Tyr797Glu798Gly799Lys800-

Sequence conservation (by blast)

[Site 4] EKMNAKWDTG780-ENPIYKSAVT

Gly780 Glu

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Glu771Lys772Met773Asn774Ala775Lys776Trp777Asp778Thr779Gly780
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Glu781Asn782Pro783Ile784Tyr785Lys786Ser787Ala788Val789Thr790

Sequence conservation (by blast)

* References

None.