SB0030 : von Willebrand factor
[ CaMP Format ]
* Basic Information
Organism | Mus musculus (house mouse) |
Protein Names | von Willebrand factor precursor [Mus musculus]; von Willebrand factor precursor; vwf; von Willebrand factor; vWF; von Willebrand antigen 2; von Willebrand antigen II |
Gene Names | Vwf; Vwf {ECO:0000312|MGI:MGI:98941}; Von Willebrand factor homolog |
Gene Locus | 6 59.32 cM; chromosome 6 |
GO Function | Not available |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 2813 aa
Average Mass: 309.154 kDa
Monoisotopic Mass: 308.951 kDa
2. Domain Information
Annotated Domains: interpro / pfam / smart / prosite
Computationally Assigned Domains (Pfam+HMMER):
domain name | begin | end | score | e-value |
---|---|---|---|---|
von Willebrand factor type D domain 1. | 35 | 179 | 1.0 | 0.2 |
Trypsin Inhibitor like cysteine rich domain 1. | 237 | 266 | 18.0 | 9.5 |
C8 domain 1. | 317 | 331 | 32.0 | 4.1 |
Trypsin Inhibitor like cysteine rich domain 2. | 367 | 384 | 31.0 | 4.2 |
Pacifastin inhibitor (LCMII) 1. | 432 | 442 | 17.0 | 0.1 |
Trypsin Inhibitor like cysteine rich domain 3. | 607 | 623 | 26.0 | 7.3 |
von Willebrand factor type C domain 1. | 651 | 651 | 40.0 | 26.3 |
Trypsin Inhibitor like cysteine rich domain 4. | 652 | 707 | 1.0 | 16.1 |
Trypsin Inhibitor like cysteine rich domain 5. | 728 | 736 | 34.0 | 0.5 |
--- cleavage 763 --- | ||||
von Willebrand factor type C domain 2. | 791 | 822 | 23.0 | 9.0 |
VWA N-terminal 1. | 846 | 858 | 25.0 | 4.8 |
DHH family 1. | 863 | 986 | 12.0 | 0.0 |
VWA N-terminal 2. | 1098 | 1119 | 27.0 | 3.4 |
Trypsin Inhibitor like cysteine rich domain 6. | 1124 | 1137 | 12.0 | 13.6 |
von Willebrand factor type C domain 3. | 1142 | 1180 | 12.0 | 17.1 |
C8 domain 2. | 1223 | 1241 | 42.0 | 2.6 |
DHH family 2. | 1303 | 1364 | 30.0 | 0.0 |
von Willebrand factor type A domain 1. | 1498 | 1644 | 1.0 | 0.0 |
von Willebrand factor type A domain 2. | 1691 | 1858 | 1.0 | 0.1 |
Pacifastin inhibitor (LCMII) 2. | 1889 | 1909 | 4.0 | 0.0 |
--- cleavage 1913 --- | ||||
Trypsin Inhibitor like cysteine rich domain 7. | 1917 | 1951 | 8.0 | 8.1 |
von Willebrand factor type C domain 4. | 2184 | 2184 | 41.0 | 23.6 |
VWA N-terminal 3. | 2211 | 2227 | 24.0 | 2.4 |
VWA N-terminal 4. | 2274 | 2297 | 21.0 | 9.7 |
VWA N-terminal 5. | 2386 | 2397 | 65.0 | 9.6 |
Pacifastin inhibitor (LCMII) 3. | 2419 | 2427 | 24.0 | 5.7 |
Trypsin Inhibitor like cysteine rich domain 8. | 2448 | 2491 | 14.0 | 13.4 |
C8 domain 3. | 2558 | 2580 | 24.0 | 7.3 |
C8 domain 4. | 2605 | 2623 | 43.0 | 2.3 |
von Willebrand factor type C domain 5. | 2665 | 2719 | 12.0 | 4.5 |
von Willebrand factor type C domain 6. | 2788 | 2788 | 24.0 | 13.0 |
3. Sequence Information
Fasta Sequence: SB0030.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Known Structures in PDB: 1U0O (X-ray; 270 A; C=1261-1468)
* Cleavage Information
2 [sites] cleaved by Calpain 2
Source Reference: [PubMed ID: 2845608] Nozaki H, Amino acid analysis of human von Willebrand factor fragments cleaved by porcine calpain II. Tokai J Exp Clin Med. 1987 Nov;12(4):223-7.
Cleavage sites (±10aa)
[Site 1] SSPLSHRSKR763-SLSCRPPMVK
Arg763 Ser
P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
---|---|---|---|---|---|---|---|---|---|
Ser754 | Ser755 | Pro756 | Leu757 | Ser758 | His759 | Arg760 | Ser761 | Lys762 | Arg763 |
P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
Ser764 | Leu765 | Ser766 | Cys767 | Arg768 | Pro769 | Pro770 | Met771 | Val772 | Lys773 |
Sequence conservation (by blast)
[Site 2] CLANGQTLLQ1913-SHRVNCDHGP
Gln1913 Ser
P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
---|---|---|---|---|---|---|---|---|---|
Cys1904 | Leu1905 | Ala1906 | Asn1907 | Gly1908 | Gln1909 | Thr1910 | Leu1911 | Leu1912 | Gln1913 |
P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
Ser1914 | His1915 | Arg1916 | Val1917 | Asn1918 | Cys1919 | Asp1920 | His1921 | Gly1922 | Pro1923 |
Sequence conservation (by blast)
* References
[PubMed ID: 24850761] Yee A, Gildersleeve RD, Gu S, Kretz CA, McGee BM, Carr KM, Pipe SW, Ginsburg D, A von Willebrand factor fragment containing the D'D3 domains is sufficient to stabilize coagulation factor VIII in mice. Blood. 2014 Jul 17;124(3):445-52. doi: 10.1182/blood-2013-11-540534. Epub 2014