logo CaMPDB: Calpain for Modulatory Proteolysis Database

XSB2713 : PREDICTED: similar to CsMA-1 isoform 1 [Ciona intestinalis]

[ CaMP Format ]

This entry is computationally expanded from SB0071

* Basic Information

OrganismCiona intestinalis
Protein Namessimilar to CsMA-1 isoform 1
Gene NamesLOC100183636; Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 1185 ESTs, 54 Proteins
Gene LocusNot available
GO FunctionNot available
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
XP_002132044 XM_002132008 100183636 N/A N/A N/A N/A N/A

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 395 aa

Average Mass: 43.892 kDa

Monoisotopic Mass: 43.864 kDa

2. Domain Information

Annotated Domains: Not Available.

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
Actin 1. 22395816.91.3e-242
--- cleavage 57 (inside Actin 22..395) ---

3. Sequence Information

Fasta Sequence: XSB2713.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Not Available.

* Cleavage Information

1 [sites]

Cleavage sites (±10aa)

[Site 1] RAVFPSIVGR57-PRHQGVMVGM

Arg57 Pro

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Arg48Ala49Val50Phe51Pro52Ser53Ile54Val55Gly56Arg57
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Pro58Arg59His60Gln61Gly62Val63Met64Val65Gly66Met67

Sequence conservation (by blast)

* References

None.