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XSB2723 : PREDICTED: similar to actin, alpha 1, skeletal muscle [Ciona intestinalis]

[ CaMP Format ]

This entry is computationally expanded from SB0071

* Basic Information

OrganismCiona intestinalis
Protein Namessimilar to actin; alpha 1; skeletal muscle
Gene NamesLOC100186048; Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 209 ESTs, 48 Proteins
Gene LocusNot available
GO FunctionNot available
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
XP_002121577 XM_002121541 100186048 N/A N/A N/A N/A N/A

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 303 aa

Average Mass: 0.000 kDa

Monoisotopic Mass: 0.000 kDa

2. Domain Information

Annotated Domains: Not Available.

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
Actin 1. 5303490.13.1e-144
--- cleavage 40 (inside Actin 5..303) ---

3. Sequence Information

Fasta Sequence: XSB2723.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Not Available.

* Cleavage Information

1 [sites]

Cleavage sites (±10aa)

[Site 1] RAVFPSIVGR40-PRHQGVMVGM

Arg40 Pro

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Arg31Ala32Val33Phe34Pro35Ser36Ile37Val38Gly39Arg40
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Pro41Arg42His43Gln44Gly45Val46Met47Val48Gly49Met50

Sequence conservation (by blast)

* References

None.