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XSB2736 : hypothetical protein BRAFLDRAFT_127488 [Branchiostoma floridae]

[ CaMP Format ]

This entry is computationally expanded from SB0071

* Basic Information

OrganismBranchiostoma floridae (Florida lancelet)
Protein NamesPutative uncharacterized protein; hypothetical protein
Gene NamesBRAFLDRAFT_127488
Gene LocusNot available
GO FunctionNot available
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
XP_002232346 XM_002232310 7247450 B6NGT9_BRAFL N/A N/A N/A N/A

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 378 aa

Average Mass: 42.045 kDa

Monoisotopic Mass: 42.018 kDa

2. Domain Information

Annotated Domains: interpro / pfam / smart / prosite

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
Actin 1. 5378777.49.6e-231
--- cleavage 40 (inside Actin 5..378) ---

3. Sequence Information

Fasta Sequence: XSB2736.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Not Available.

* Cleavage Information

1 [sites]

Cleavage sites (±10aa)

[Site 1] RAVFPSIVGR40-PRHQGVMVGM

Arg40 Pro

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Arg31Ala32Val33Phe34Pro35Ser36Ile37Val38Gly39Arg40
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Pro41Arg42His43Gln44Gly45Val46Met47Val48Gly49Met50

Sequence conservation (by blast)

* References

[PubMed ID: 18563158] Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A, Yu JK, Benito-Gutierrez EL, Dubchak I, Garcia-Fernandez J, Gibson-Brown JJ, Grigoriev IV, Horton AC, de Jong PJ, Jurka J, Kapitonov VV, Kohara Y, Kuroki Y, Lindquist E, Lucas S, Osoegawa K, Pennacchio LA, Salamov AA, Satou Y, Sauka-Spengler T, Schmutz J, Shin-I T, Toyoda A, Bronner-Fraser M, Fujiyama A, Holland LZ, Holland PW, Satoh N, Rokhsar DS, The amphioxus genome and the evolution of the chordate karyotype. Nature. 2008 Jun 19;453(7198):1064-71.