CL0895 : calpain 11
[ CaMP Format ]
* Basic Information
Organism | Homo sapiens (human) |
Protein Names | calpain 11 [Homo sapiens]; Calpain-11; 3.4.22.-; Calcium-activated neutral proteinase 11; CANP 11 |
Gene Names | CAPN11; calpain 11 |
Gene Locus | 6p12; chromosome 6 |
GO Function | Not available |
* Information From OMIM
Text: Calpains are a superfamily of related proteins, some of which have been shown to function as intracellular calcium-dependent cysteine proteases. Calpains consist of a variable large (80 kD) subunit and an invariant small (30 kD) subunit (CAPN4; OMIM:114170). By searching an EST database with the protein sequences of known vertebrate calpains, Dear et al. (1999) identified a calpain-11 (CAPN11) EST. The complete CAPN11 coding sequence encodes a deduced 702-amino acid protein with similarity to the large subunits of calpains. CAPN11 can be subdivided into the 4 domains typical of calpains. Domain II shows the characteristics of a protease domain and contains the cysteine, histidine, and asparagine residues that are part of the active site of cysteine proteases. Domain IV contains 5 putative calcium-binding EF-hand motifs. Dear et al. (1999) concluded that CAPN11 is likely to have protease activity and calcium-binding ability. Compared to all known calpains, CAPN11 shared the greatest sequence homology, 57.5%, with chicken mu/m calpain. Sequence homology between CAPN11 and known human calpains ranged from 54.3% with CAPN1 (OMIM:114220) to 18.7% with CAPN6 (OMIM:300146). Dot blot analysis of RNA from 50 different human tissues showed highest expression of CAPN11 in testis. Northern blot analysis of a variety of human tissues detected an approximately 3-kb CAPN11 transcript in testis.
* Structure Information
1. Primary Information
Length: 702 aa
Average Mass: 80.583 kDa
Monoisotopic Mass: 80.531 kDa
2. Domain Information
Annotated Domains: interpro / pfam / smart / prosite
Computationally Assigned Domains (Pfam+HMMER):
domain name | begin | end | score | e-value |
---|---|---|---|---|
Peptidase_C2 1. | 42 | 341 | 614.1 | 1.4e-181 |
Calpain_III 1. | 352 | 510 | 279.0 | 1.1e-80 |
efhand 1. | 577 | 605 | 24.4 | 0.00045 |
efhand 2. | 607 | 635 | 22.4 | 0.0019 |
3. Sequence Information
Fasta Sequence: CL0895.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* References
[PubMed ID: 10409436] Dear TN, Moller A, Boehm T, CAPN11: A calpain with high mRNA levels in testis and located on chromosome 6. Genomics. 1999 Jul 15;59(2):243-7.