CaMPDB :: Calpain :: Statistics

Sixteen calpain types of vertebrates and their reference sequences

types	NCBI Protein ID (CaMP ID)	organism
Calpain 1	NP_005177 (CL0892)	[Homo sapiens]
Calpain 2	NP_001739 (CL0890)	[Homo sapiens]
Calpain 3	NP_000061 (CL0842)	[Homo sapiens]
Calpain 5	NP_004046 (CL0891)	[Homo sapiens]
Calpain 6	NP_055104 (CL0904)	[Homo sapiens]
Calpain 7	NP_055111 (CL0905)	[Homo sapiens]
Calpain 8	XP_943978 (CL1417)	[Homo sapiens]
Calpain 9	NP_006606 (CL0894)	[Homo sapiens]
Calpain 10	NP_075571 (CL0913)	[Homo sapiens]
Calpain 11	NP_008989 (CL0895)	[Homo sapiens]
Calpain 12	NP_653292 (CL0946)	[Homo sapiens]
Calpain 13	NP_653176 (CL0945)	[Homo sapiens]
Calpain 14	EAX00484 (CL0810)	[Homo sapiens]
Calpain 15	NP_005623 (CL0893)	[Homo sapiens]
Calpain 16	EAW47827 (CL0767)	[Homo sapiens]
Calpain C	NP_990634 (CL0963)	[Gallus gallus]

Number of sequences in 16 calpain types

organism

total

Homo sapiens (human)	(177)	16	15	21	11	9	7	7	17	31	10	5	10	3	7	8	0	0
Mus musculus (house mouse)	(120)	14	12	18	11	8	6	9	8	12	4	8	4	0	6	0	0	0
Rattus norvegicus (Norway rat)	(91)	16	9	18	5	5	3	6	5	8	4	3	4	0	3	1	0	1
Danio rerio (zebrafish)	(66)	13	20	4	5	0	1	0	4	1	0	0	0	0	1	2	9	6
Paramecium tetraurelia	(66)	4	0	0	2	0	0	0	0	0	2	0	0	0	22	0	4	32
Tetrahymena thermophila SB210	(60)	0	2	0	0	0	0	0	4	0	2	0	0	2	18	0	0	32
Unknown.	(41)	3	8	6	3	1	2	1	4	10	2	0	0	0	0	0	0	1
Canis lupus familiaris (dog)	(40)	2	1	20	2	1	3	1	1	2	1	1	1	1	2	1	0	0
Caenorhabditis elegans	(40)	0	0	0	4	0	2	8	8	0	0	0	0	0	7	0	2	8
Trypanosoma cruzi strain CL Brener	(32)	0	0	1	0	0	2	0	0	0	0	0	0	0	8	0	0	21
Trypanosoma cruzi	(32)	0	0	1	0	0	2	0	0	0	0	0	0	0	8	0	0	21
Drosophila melanogaster (fruit fly)	(31)	0	0	0	0	0	0	0	20	0	0	0	0	0	10	0	0	0
Xenopus laevis (African clawed frog)	(30)	5	3	0	4	0	0	6	2	1	0	0	2	0	0	0	7	0
Pan troglodytes (chimpanzee)	(30)	12	0	1	0	4	2	1	6	0	0	1	2	1	0	0	0	0
Bos taurus (cattle)	(28)	6	2	6	1	1	1	2	0	1	1	1	2	1	1	1	0	1
Tetraodon nigroviridis	(25)	2	3	3	4	0	1	0	3	1	0	0	0	0	3	0	2	3
Trypanosoma brucei	(24)	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	21
Leishmania infantum	(22)	0	0	0	0	0	1	0	0	0	0	0	0	0	7	0	0	14
Leishmania infantum JPCM5	(22)	0	0	0	0	0	1	0	0	0	0	0	0	0	7	0	0	14
Sus scrofa (pig)	(20)	8	0	6	0	0	3	0	0	3	0	0	0	0	0	0	0	0
Leishmania major	(20)	0	0	0	0	0	1	1	0	0	0	0	0	0	8	0	0	10
Leishmania braziliensis	(19)	0	0	0	0	0	1	0	0	0	0	0	0	0	4	0	0	14
Trichomonas vaginalis G3	(19)	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	17
Anopheles gambiae str. PEST	(18)	0	2	0	0	0	2	0	8	0	2	0	0	0	2	0	0	2
Gallus gallus (chicken)	(16)	3	4	4	0	0	0	0	0	0	0	0	0	0	0	0	5	0
Trypanosoma brucei TREU927	(16)	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	13
Strongylocentrotus purpuratus	(16)	0	0	0	6	0	2	0	2	0	0	0	0	0	2	4	0	0
Xenopus tropicalis (Silurana tropicalis)	(16)	2	2	0	2	0	2	3	0	0	3	0	0	0	0	0	2	0
synthetic construct	(15)	4	2	0	1	2	0	0	0	2	1	1	0	0	2	0	0	0
Macaca mulatta (rhesus monkey)	(14)	6	1	1	0	0	1	1	0	1	0	0	0	1	2	0	0	0
Monodelphis domestica (gray short-tailed opossum)	(13)	0	1	1	1	1	1	1	2	1	0	1	1	1	1	0	0	0
Macaca fascicularis (crab-eating macaque)	(12)	3	2	2	0	0	0	0	0	3	1	1	0	0	0	0	0	0
Ornithorhynchus anatinus (platypus)	(11)	0	1	1	1	0	1	1	1	1	0	1	2	1	0	0	0	0
Schistosoma japonicum	(11)	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	6	2
Aedes aegypti (Stegomyia aegypti)	(10)	0	0	1	0	0	2	0	4	0	1	0	0	0	1	0	1	0
Magnaporthe grisea 70-15	(10)	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	6
Gallus gallus (red jungle fowl)	(10)	0	0	0	2	0	1	1	1	1	1	0	0	1	1	1	0	0
Caenorhabditis briggsae	(10)	0	0	0	1	0	1	2	1	0	0	0	0	0	1	0	0	4
Cryptococcus neoformans var. neoformans B-3501A	(8)	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	6
Coprinopsis cinerea okayama7#130 (Coprinus cinereus okayama7#130)	(8)	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	5
Leishmania major strain Friedlin	(7)	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	6
Ovis aries (sheep)	(7)	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	3
Arabidopsis thaliana (thale cress)	(7)	0	0	6	0	0	0	0	0	0	0	0	0	0	1	0	0	0
Neurospora crassa	(7)	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	2	1
Tribolium castaneum (red flour beetle)	(6)	0	0	0	0	0	1	1	3	0	0	0	0	0	1	0	0	0
Synechococcus sp. RS9916	(6)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6
Herpetosiphon aurantiacus ATCC 23779	(6)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6
Ostreococcus lucimarinus CCE9901	(6)	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	4
Aspergillus oryzae	(5)	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0
Gibberella zeae PH-1 (anamorph: Fusarium graminearum)	(4)	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1
Oryza sativa (japonica cultivar-group)	(4)	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Aspergillus clavatus NRRL 1	(4)	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0
Neosartorya fischeri NRRL 181	(4)	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0
Gecarcinus lateralis (blackback land crab)	(4)	1	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0
Oryctolagus cuniculus (rabbit)	(4)	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Chaetomium globosum CBS 148.51	(4)	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2
Candida albicans SC5314	(4)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4
Drosophila pseudoobscura	(4)	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
Aspergillus nidulans FGSC A4	(4)	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0
Aspergillus terreus NIH2624	(4)	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
Oncorhynchus mykiss (rainbow trout)	(4)	1	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
Aspergillus fumigatus Af293	(4)	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0
Neurospora crassa OR74A	(4)	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	1
Schistosoma mansoni	(3)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0
Saccharomyces cerevisiae (baker's yeast)	(3)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
Nostoc sp. PCC 7120	(3)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
Apis mellifera (honey bee)	(3)	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0
Zea mays	(3)	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Nostoc sp. PCC 7120 (Anabaena sp. PCC 7120)	(3)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
Frankia alni ACN14a	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Plasmodium chabaudi chabaudi	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Ustilago maydis 521	(2)	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
Frankia sp. EAN1pec	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Phaeosphaeria nodorum SN15	(2)	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
Photorhabdus luminescens subsp. laumondii TTO1	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Salinispora tropica CNB-440	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Bradyrhizobium sp. ORS278	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Plasmodium berghei	(2)	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
Granulibacter bethesdensis CGDNIH1	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Bos grunniens (domestic yak)	(2)	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Aspergillus niger CBS 513.88	(2)	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0
Cryptococcus neoformans var. neoformans JEC21 (Filobasidiella neoformans var. neoformans strain JEC21)	(2)	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
Plasmodium falciparum 3D7	(2)	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
Plasmodium berghei strain ANKA	(2)	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
Equus caballus (horse)	(2)	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
Bacteroides thetaiotaomicron VPI-5482	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Yarrowia lipolytica CLIB122	(2)	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
Emericella nidulans (anamorph: Aspergillus nidulans)	(2)	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
Coccidioides immitis RS	(2)	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
Geobacter lovleyi SZ	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Anabaena variabilis ATCC 29413 (Anabaena flos-aquae UTEX 1444)	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Yarrowia lipolytica	(2)	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
Ashbya gossypii ATCC 10895 (Eremothecium gossypii ATCC 10895)	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Bos taurus x Bos indicus	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Ostreococcus tauri	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
Candida glabrata CBS 138	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Lodderomyces elongisporus NRRL YB-4239	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Pongo pygmaeus (orangutan)	(2)	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Pichia guilliermondii ATCC 6260	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Ciona intestinalis	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
Frankia sp. CcI3	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Cryptosporidium parvum Iowa II	(2)	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
Porphyromonas gingivalis W83	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Plasmodium chabaudi	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Kluyveromyces lactis NRRL Y-1140	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Stizostedion vitreum vitreum	(2)	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Gloeobacter violaceus PCC 7421	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Debaryomyces hansenii CBS767	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Rhodopseudomonas palustris BisA53	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Bradyrhizobium sp. BTAi1	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Aspergillus niger	(2)	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0
Porphyromonas gingivalis	(2)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
Vitis vinifera	(1)	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
Anopheles gambiae (African malaria mosquito)	(1)	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
Plasmodium yoelii yoelii	(1)	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
Plasmodium yoelii yoelii str. 17XNL	(1)	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
Saccharum hybrid cultivar	(1)	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Theileria annulata strain Ankara	(1)	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
Debaryomyces hansenii (anamorph: Candida famata)	(1)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
Plasmodium vivax (malaria parasite P. vivax)	(1)	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
Theileria parva	(1)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
Homarus americanus (American lobster)	(1)	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
Oryza sativa	(1)	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Candida albicans	(1)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
Eremothecium gossypii (Ashbya gossypii)	(1)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
Kluyveromyces lactis	(1)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
Theileria annulata	(1)	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
Nicotiana benthamiana	(1)	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
Oryza sativa (indica cultivar-group)	(1)	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Pichia stipitis CBS 6054	(1)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
Filobasidiella neoformans (anamorph: Cryptococcus neoformans)	(1)	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
Theileria parva strain Muguga	(1)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
Entamoeba histolytica HM-1:IMSS	(1)	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
Candida glabrata	(1)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
Toxoplasma gondii RH	(1)	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
Coturnix coturnix (common quail)	(1)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
Sterkiella histriomuscorum (Oxytricha trifallax)	(1)	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
Schistosoma haematobium	(1)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

Classification procedure

Reference sequences of 16 known classes were selected.
Each entry (sequence) was classified into one of 16 classes using the Smith-Waterman (SW) local alignment algorithm (with naive threshoulding, <500 for "unclassified(x)"). More concretely, 16 SW scores were computed for each sequence and the class of the highest score was assigned. The computed scores are available (calpain_alignments.result) and the detailed table of sw scores, bit scores, and e-values for all pairs are also available (calpain_allpairs_swscores.table).