CaMPDB :: Calpain

CL0921 : small optic lobes

* Basic Information

Organism	Drosophila melanogaster (fruit fly)
Protein Names	isoform B; CG1391-PB; sol-PB; small optic lobe; small optic lobes, isoform B [Drosophila melanogaster]; Calpain-D; 3.4.22.-; Calcium-activated neutral proteinase D; CANP D; Small optic lobes protein
Gene Names	sol; CG1391; CalpD; small optic lobes
Gene Locus	Not available
GO Function	Not available

Entrez Protein	Entrez Nucleotide	Entrez Gene	UniProt	OMIM	HGNC	HPRD	KEGG
NP_476738	NM_057390	44014	P27398	N/A	N/A	N/A	dme:Dmel_CG1391

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 1594 aa

Average Mass: 174.313 kDa

Monoisotopic Mass: 174.204 kDa

2. Domain Information

Annotated Domains: interpro / pfam / smart / prosite

Computationally Assigned Domains (Pfam+HMMER):

domain name	begin	end	score	e-value
zf-RanBP 1.	6	35	40.4	7.2e-09
zf-RanBP 2.	135	164	38.0	3.7e-08
TF_Otx 1.	371	436	-43.3	7
zf-RanBP 3.	643	673	36.1	1.4e-07
zf-RanBP 4.	704	733	44.2	5.1e-10
zf-RanBP 5.	744	774	46.0	1.5e-10
zf-RanBP 6.	927	956	40.7	5.7e-09
Peptidase_C2 1.	1014	1321	718.4	5.7e-213

3. Sequence Information

Fasta Sequence: CL0921.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Not Available.

* References

[PubMed ID: 17569867] Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE, Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Science. 2007 Jun 15;316(5831):1625-8.

» More (7) « Hide Below

[PubMed ID: 17569856] ... Smith CD, Shu S, Mungall CJ, Karpen GH, The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Science. 2007 Jun 15;316(5831):1586-91.

[PubMed ID: 16110336] ... Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D, Combined evidence annotation of transposable elements in genome sequences. PLoS Comput Biol. 2005 Jul;1(2):166-75. Epub 2005 Jul 29.

[PubMed ID: 12537574] ... Hoskins RA, Smith CD, Carlson JW, Carvalho AB, Halpern A, Kaminker JS, Kennedy C, Mungall CJ, Sullivan BA, Sutton GG, Yasuhara JC, Wakimoto BT, Myers EW, Celniker SE, Rubin GM, Karpen GH, Heterochromatic sequences in a Drosophila whole-genome shotgun assembly. Genome Biol. 2002;3(12):RESEARCH0085. Epub 2002 Dec 31.

[PubMed ID: 12537573] ... Kaminker JS, Bergman CM, Kronmiller B, Carlson J, Svirskas R, Patel S, Frise E, Wheeler DA, Lewis SE, Rubin GM, Ashburner M, Celniker SE, The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. Genome Biol. 2002;3(12):RESEARCH0084. Epub 2002 Dec 23.

[PubMed ID: 12537572] ... Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, Smith CD, Tupy JL, Whitfied EJ, Bayraktaroglu L, Berman BP, Bettencourt BR, Celniker SE, de Grey AD, Drysdale RA, Harris NL, Richter J, Russo S, Schroeder AJ, Shu SQ, Stapleton M, Yamada C, Ashburner M, Gelbart WM, Rubin GM, Lewis SE, Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. Genome Biol. 2002;3(12):RESEARCH0083. Epub 2002 Dec 31.

[PubMed ID: 12537568] ... Celniker SE, Wheeler DA, Kronmiller B, Carlson JW, Halpern A, Patel S, Adams M, Champe M, Dugan SP, Frise E, Hodgson A, George RA, Hoskins RA, Laverty T, Muzny DM, Nelson CR, Pacleb JM, Park S, Pfeiffer BD, Richards S, Sodergren EJ, Svirskas R, Tabor PE, Wan K, Stapleton M, Sutton GG, Venter C, Weinstock G, Scherer SE, Myers EW, Gibbs RA, Rubin GM, Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biol. 2002;3(12):RESEARCH0079. Epub 2002 Dec 23.

[PubMed ID: 10731132] ... Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, Sutton GG, Wortman JR, Yandell MD, Zhang Q, Chen LX, Brandon RC, Rogers YH, Blazej RG, Champe M, Pfeiffer BD, Wan KH, Doyle C, Baxter EG, Helt G, Nelson CR, Gabor GL, Abril JF, Agbayani A, An HJ, Andrews-Pfannkoch C, Baldwin D, Ballew RM, Basu A, Baxendale J, Bayraktaroglu L, Beasley EM, Beeson KY, Benos PV, Berman BP, Bhandari D, Bolshakov S, Borkova D, Botchan MR, Bouck J, Brokstein P, Brottier P, Burtis KC, Busam DA, Butler H, Cadieu E, Center A, Chandra I, Cherry JM, Cawley S, Dahlke C, Davenport LB, Davies P, de Pablos B, Delcher A, Deng Z, Mays AD, Dew I, Dietz SM, Dodson K, Doup LE, Downes M, Dugan-Rocha S, Dunkov BC, Dunn P, Durbin KJ, Evangelista CC, Ferraz C, Ferriera S, Fleischmann W, Fosler C, Gabrielian AE, Garg NS, Gelbart WM, Glasser K, Glodek A, Gong F, Gorrell JH, Gu Z, Guan P, Harris M, Harris NL, Harvey D, Heiman TJ, Hernandez JR, Houck J, Hostin D, Houston KA, Howland TJ, Wei MH, Ibegwam C, Jalali M, Kalush F, Karpen GH, Ke Z, Kennison JA, Ketchum KA, Kimmel BE, Kodira CD, Kraft C, Kravitz S, Kulp D, Lai Z, Lasko P, Lei Y, Levitsky AA, Li J, Li Z, Liang Y, Lin X, Liu X, Mattei B, McIntosh TC, McLeod MP, McPherson D, Merkulov G, Milshina NV, Mobarry C, Morris J, Moshrefi A, Mount SM, Moy M, Murphy B, Murphy L, Muzny DM, Nelson DL, Nelson DR, Nelson KA, Nixon K, Nusskern DR, Pacleb JM, Palazzolo M, Pittman GS, Pan S, Pollard J, Puri V, Reese MG, Reinert K, Remington K, Saunders RD, Scheeler F, Shen H, Shue BC, Siden-Kiamos I, Simpson M, Skupski MP, Smith T, Spier E, Spradling AC, Stapleton M, Strong R, Sun E, Svirskas R, Tector C, Turner R, Venter E, Wang AH, Wang X, Wang ZY, Wassarman DA, Weinstock GM, Weissenbach J, Williams SM, WoodageT, Worley KC, Wu D, Yang S, Yao QA, Ye J, Yeh RF, Zaveri JS, Zhan M, Zhang G, Zhao Q, Zheng L, Zheng XH, Zhong FN, Zhong W, Zhou X, Zhu S, Zhu X, Smith HO, Gibbs RA, Myers EW, Rubin GM, Venter JC, The genome sequence of Drosophila melanogaster. Science. 2000 Mar 24;287(5461):2185-95.