XSB0103 : RecName: Full=Vimentin
[ CaMP Format ]
This entry is computationally expanded from SB0037
* Basic Information
| Organism | Mesocricetus auratus (golden hamster) |
| Protein Names | Vimentin |
| Gene Names | VIM |
| Gene Locus | Not available |
| GO Function | Not available |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 465 aa
Average Mass: 53.730 kDa
Monoisotopic Mass: 53.697 kDa
2. Domain Information
Annotated Domains: interpro / pfam / smart / prosite
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
|---|---|---|---|---|
| Filament_head 1. | 6 | 100 | 101.0 | 4.1e-27 |
| --- cleavage 51 (inside Filament_head 6..100) --- | ||||
| Filament 1. | 101 | 409 | 611.2 | 1e-180 |
3. Sequence Information
Fasta Sequence: XSB0103.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
1 [sites]
Cleavage sites (±10aa)
[Site 1] SLRPSTSRSL51-YSSSPGGAYV
Leu51 
Tyr
 |
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Ser42 | Leu43 | Arg44 | Pro45 | Ser46 | Thr47 | Ser48 | Arg49 | Ser50 | Leu51 |
 |
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Tyr52 | Ser53 | Ser54 | Ser55 | Pro56 | Gly57 | Gly58 | Ala59 | Tyr60 | Val61 |
Sequence conservation (by blast)
* References
[PubMed ID: 6194898] Quax W, Egberts WV, Hendriks W, Quax-Jeuken Y, Bloemendal H, The structure of the vimentin gene. Cell. 1983 Nov;35(1):215-23.