XSB0251 : unnamed protein product [Mus musculus]
[ CaMP Format ]
This entry is computationally expanded from SB0017
* Basic Information
| Organism | Mus musculus (house mouse) |
| Protein Names | Calpain small subunit 1; CSS1; Calcium-dependent protease small subunit 1; Calcium-dependent protease small subunit; CDPS; Calpain regulatory subunit; Calcium-activated neutral proteinase small subunit; CANP small subunit |
| Gene Names | Capn4 |
| Gene Locus | Not available |
| GO Function | Not available |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 202 aa
Average Mass: 23.090 kDa
Monoisotopic Mass: 23.075 kDa
2. Domain Information
Annotated Domains: interpro / pfam / smart / prosite
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
|---|---|---|---|---|
| --- cleavage 75 --- | ||||
| efhand 1. | 77 | 105 | 18.4 | 0.03 |
| efhand 2. | 107 | 135 | 16.7 | 0.098 |
| efhand 3. | 143 | 170 | 0.4 | 19 |
| efhand 4. | 172 | 199 | 7.5 | 3.2 |
3. Sequence Information
Fasta Sequence: XSB0251.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
1 [sites]
Cleavage sites (±10aa)
[Site 1] PDLKTDGFGI75-DTCRSMVAVM
Ile75 
Asp
 |
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Pro66 | Asp67 | Leu68 | Lys69 | Thr70 | Asp71 | Gly72 | Phe73 | Gly74 | Ile75 |
 |
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Asp76 | Thr77 | Cys78 | Arg79 | Ser80 | Met81 | Val82 | Ala83 | Val84 | Met85 |
Sequence conservation (by blast)
Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | Homo sapiens | 126.00 | 38 | Calpain, small subunit 1 |
| 2 | Mus musculus | 126.00 | 33 | unnamed protein product |
| 3 | N/A | 126.00 | 27 | S |
| 4 | Rattus norvegicus | 126.00 | 13 | calpain, small subunit 1 |
| 5 | Bos taurus | 126.00 | 8 | calpain, small subunit 1 |
| 6 | Sus scrofa | 126.00 | 7 | calpain, small subunit 1 |
| 7 | Ovis aries | 125.00 | 3 | calpain II small subunit |
| 8 | Oryctolagus cuniculus | 125.00 | 2 | calpain, small subunit 1 |
| 9 | Gallus gallus | 123.00 | 8 | calpain small subunit |
| 10 | Canis familiaris | 110.00 | 23 | PREDICTED: similar to calpain small subunit 2 |
| 11 | Pan troglodytes | 110.00 | 8 | PREDICTED: acyltransferase like 1 |
| 12 | Macaca mulatta | 110.00 | 4 | PREDICTED: similar to calpain small subunit 2 |
| 13 | Xenopus laevis | 109.00 | 13 | LOC446963 protein |
| 14 | Xenopus tropicalis | 108.00 | 6 | calpain, small subunit 2 |
| 15 | Danio rerio | 105.00 | 26 | hypothetical protein LOC550598 |
| 16 | Monodelphis domestica | 103.00 | 4 | PREDICTED: similar to Calpain, small subunit 2 |
| 17 | Oncorhynchus mykiss | 98.20 | 5 | calpain regulatory subunit |
| 18 | Tetraodon nigroviridis | 94.00 | 10 | unnamed protein product |
| 19 | Coturnix coturnix | 80.10 | 1 | quail calpain |
| 20 | Macaca fascicularis | 79.30 | 1 | CAN3_MACFA Calpain-3 (Calpain L3) (Calpain p94) (C |
| 21 | synthetic construct | 77.40 | 1 | Homo sapiens calpain 1, (mu/I) large subunit |
| 22 | Pongo pygmaeus | 76.30 | 1 | CAN1_PONPY Calpain-1 catalytic subunit (Calpain-1 |
| 23 | Stizostedion vitreum vitreum | 74.30 | 1 | putative calpain-like protein |
| 24 | catalytic | 70.10 | 1 | Calpain 2, large |
| 25 | Strongylocentrotus purpuratus | 65.10 | 1 | PREDICTED: similar to calpain B isoform 2 |
| 26 | Schistosoma japonicum | 59.70 | 2 | unknown |
| 27 | Tribolium castaneum | 57.80 | 1 | PREDICTED: similar to CG8107-PA |
| 28 | Gecarcinus lateralis | 57.00 | 1 | calpain B |
Top-ranked sequences
| organism | matching |
|---|---|
| Homo sapiens | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |
| Mus musculus | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |
| N/A | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |
| Rattus norvegicus | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |
| Bos taurus | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |
| Sus scrofa | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |
| Ovis aries | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |||||||||||||||||||||||||||||+#|||||||||||||||||||||||||||||| Sbjct 28 DMEVSATELMNILNKVVTRHPDLKTDGFGV#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 87 |
| Oryctolagus cuniculus | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |||||||||||||||||||||||||||||+#|||||||||||||||||||||||||||||| Sbjct 110 DMEVSATELMNILNKVVTRHPDLKTDGFGL#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 169 |
| Gallus gallus | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 ||||| |||||||||||||||||||||||+#|||||||||||||||||||||||||||||| Sbjct 58 DMEVSPTELMNILNKVVTRHPDLKTDGFGL#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 117 |
| Canis familiaris | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |||| ||+||||||||+++| ||||||| +#|||||+|+|||||||||||||||||||||| Sbjct 95 DMEVGATDLMNILNKVLSKHKDLKTDGFSL#DTCRSIVSVMDSDTTGKLGFEEFKYLWNNI 154 |
| Pan troglodytes | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |||| ||+||||||||+++| ||||||| +#|||||+|+|||||||||||||||||||||| Sbjct 492 DMEVGATDLMNILNKVLSKHKDLKTDGFSL#DTCRSIVSVMDSDTTGKLGFEEFKYLWNNI 551 |
| Macaca mulatta | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |||| ||+||||||||+++| ||||||| +#|||||+|+|||||||||||||||||||||| Sbjct 92 DMEVGATDLMNILNKVLSKHKDLKTDGFSL#DTCRSIVSVMDSDTTGKLGFEEFKYLWNNI 151 |
| Xenopus laevis | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |||||| ||| |||||| || ||||||| +#|+|||||||||||+|||||||||||||+|| Sbjct 71 DMEVSAAELMGILNKVVARHQDLKTDGFSV#DSCRSMVAVMDSDSTGKLGFEEFKYLWDNI 130 |
| Xenopus tropicalis | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |||||||||| |||||+ +| ||||||| #|+|||||||||||+|||||||||||||+|| Sbjct 78 DMEVSATELMGILNKVIAKHQDLKTDGFSA#DSCRSMVAVMDSDSTGKLGFEEFKYLWDNI 137 |
| Danio rerio | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 ||||| |||||||||++++| ||||||| |#++|||||||||||+|||||| |||+||||| Sbjct 60 DMEVSPTELMNILNKIISKHGDLKTDGFTI#ESCRSMVAVMDSDSTGKLGFHEFKHLWNNI 119 |
| Monodelphis domestica | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |||| +||||||||+++| +| |||| +#|||||+||||||| |||||||||||||||| Sbjct 89 DMEVGPADLMNILNKVISKHRELNTDGFSL#DTCRSIVAVMDSDATGKLGFEEFKYLWNNI 148 |
| Oncorhynchus mykiss | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 ||||| ||||||||+++ + ||||||| |#++|| ||||||||+|||||| | |+||||| Sbjct 60 DMEVSPTELMNILNRIIGKRSDLKTDGFSI#ESCRGMVAVMDSDSTGKLGFHELKFLWNNI 119 |
| Tetraodon nigroviridis | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 ||||| || +|||||+ | ++||||| |#++|||||||||||+|||||| |||||| || Sbjct 61 DMEVSPGELKDILNKVIGRFSNMKTDGFSI#ESCRSMVAVMDSDSTGKLGFHEFKYLWGNI 120 |
| Coturnix coturnix | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |||+| || |||+|+ || ||||||| +#|+||+|| +|| | + +|| ||+ ||| | Sbjct 549 DMEISVFELKTILNRVIARHKDLKTDGFSL#DSCRNMVNLMDKDGSARLGLVEFQILWNKI 608 |
| Macaca fascicularis | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |||+ | || +|| || +| |||| || +#++||||+|+||+| +||| +|| +||| | Sbjct 659 DMEICADELKKVLNTVVNKHKDLKTHGFTL#ESCRSMIALMDTDGSGKLNLQEFHHLWNKI 718 |
| synthetic construct | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |||+| || |||+++++| ||+| || +#++||||| +|| | |||| || ||| | Sbjct 558 DMEISVKELRTILNRIISKHKDLRTKGFSL#ESCRSMVNLMDRDGNGKLGLVEFNILWNRI 617 |
| Pongo pygmaeus | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 ||| | || |||+++++| ||+| || +#++||||| +|| | |||| || ||| | Sbjct 558 DMETSVKELRTILNRIISKHKDLRTKGFSL#ESCRSMVNLMDRDGNGKLGLVEFNILWNRI 617 |
| Stizostedion vitreum vitreum | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 | |+|+ || |||+|||+ |+|| || |# |||+|| ++| | +|||| ||| || | Sbjct 546 DCEISSYELQKILNRVVTKRSDIKTSGFSI#TTCRNMVNMLDKDGSGKLGLLEFKVLWTKI 605 |
| catalytic | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 | |+|| || || +|+ + |+|+||| |#+||+ || ++||| +|||| +|| || | Sbjct 574 DAEISAFELQTILRRVLAKRQDIKSDGFSI#ETCKIMVDMLDSDGSGKLGLKEFYILWTKI 633 |
| Strongylocentrotus purpuratus | Query 46 DMEVSATELMNILNKVVTRH----PDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYL 101 |||| | || ||| + + +|+ || +#++|+||||+ | | +||||||||+ | Sbjct 529 DMEVDAWELQEILNAALRKDLQVPGELQGGGFSL#ESCKSMVALTDDDRSGKLGFEEFREL 588 Query 102 WNNI 105 | || Sbjct 589 WQNI 592 |
| Schistosoma japonicum | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWN 103 | |+ | || +||| || | ||| +#++||||+|+|| | +| | | ||+ ||+ Sbjct 201 DGEIDADELRDILNCAFTR--DFTFDGFSL#ESCRSMIAMMDFDRSGMLSFPEFRKLWD 256 |
| Tribolium castaneum | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 | || || ||+ || + || #| ||||+|++| | |||| ||||| || +| Sbjct 960 DEEVDWKELKEILDHY-TRKVKTQNRGFSK#DVCRSMIAMLDVDRTGKLNFEEFKRLWESI 1018 |
| Gecarcinus lateralis | Query 46 DMEVSATELMNILNKVVTRHPDLKTDGFGI#DTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 105 |+|+ || ++|| + | + +|| #| ||||+|+|| | +|||| +|| || +| Sbjct 600 DLEIDWKELQDVLNFALKR--EFNFEGFSK#DVCRSMIAMMDVDRSGKLGLQEFLQLWMDI 657 |
* References
[PubMed ID: 10349636] Carninci P, Hayashizaki Y, High-efficiency full-length cDNA cloning. Methods Enzymol. 1999;303:19-44.
[PubMed ID: 11042159] ... Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M, Konno H, Okazaki Y, Muramatsu M, Hayashizaki Y, Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Genome Res. 2000 Oct;10(10):1617-30.
[PubMed ID: 11076861] ... Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K, Togawa Y, RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Genome Res. 2000 Nov;10(11):1757-71.
[PubMed ID: 11217851] ... Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W, Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F, Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M, Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N, Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C, Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA, Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J, Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF, Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L, Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S, Hayashizaki Y, Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90.
[PubMed ID: 12466851] ... Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002 Dec 5;420(6915):563-73.
[PubMed ID: 16141072] ... Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y, The transcriptional landscape of the mammalian genome. Science. 2005 Sep 2;309(5740):1559-63.
[PubMed ID: 16141073] ... Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C, Antisense transcription in the mammalian transcriptome. Science. 2005 Sep 2;309(5740):1564-6.