Summary

Top-ranked sequences

Query   737 GFMHCTTSGTLGSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796
            ||||||||||||||||||||||||||||||#||||||||||||||||||||||||||||||
Query   737 GFMHCTTSGTLGSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796

Query   737 GFMHCTTSGTLGSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796
            ||||||||||||||||||||||||||||||#||||||||||||||||||||||||||||||
Query   737 GFMHCTTSGTLGSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796

Query   737 GFMHCTTSGTLGSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796
            |||||||||  |||||+ ||||||||||||#||||||||||||||||||||||||||||||
Sbjct   733 GFMHCTTSGASGSLLPNIVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  792

Query   737 GFMHCTTSGTLGSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796
            ||||||||| ||||||+ ||||| ||||||#||||||||||||||||||||+|||||||||
Sbjct   734 GFMHCTTSGGLGSLLPNPVLSSPRSHRSKR#SLSCRPPMVKLVCPADNPRAEGLECAKTCQ  793

Query   737 GFMHCTTSGTLGSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796
            ||||||||| ||||||+ ||||| ||||||#||||||||||||||||||||+|||||||||
Sbjct   734 GFMHCTTSGGLGSLLPNPVLSSPRSHRSKR#SLSCRPPMVKLVCPADNPRAEGLECAKTCQ  793

Query   737 GFMHCTTSGTLGSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796
            ||||||||| ||||||+ ||||| ||||||#||||||||||||||||||||+|||||||||
Sbjct   734 GFMHCTTSGGLGSLLPNPVLSSPRSHRSKR#SLSCRPPMVKLVCPADNPRAEGLECAKTCQ  793

Query   737 GFMHCTTSGTLGSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796
            |||||+|||  |||||+ ||||||||||||#||||||||||+|||||||||+|||| ||||
Sbjct   749 GFMHCSTSGAPGSLLPEAVLSSPLSHRSKR#SLSCRPPMVKVVCPADNPRAEGLECTKTCQ  808

Query   737 GFMHCTTSGTLGSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796
            |||||| ||  |||||| ||||||||||||#||||||||||||||||| ||+|||| ||||
Sbjct   734 GFMHCTMSGVPGSLLPDAVLSSPLSHRSKR#SLSCRPPMVKLVCPADNLRAEGLECTKTCQ  793

Query   737 GFMHCTTSGTLGSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796
            |||||| ||  |||||| ||||||||||||#||||||||||||||||| +|+|||||||||
Sbjct   734 GFMHCTMSGVPGSLLPDAVLSSPLSHRSKR#SLSCRPPMVKLVCPADNLQAEGLECAKTCQ  793

Query   737 GFMHCTTSGTLGSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796
            |||||+ +|  ||| |+ ||||||||||||#||||||||||||||||||||+|||||||||
Sbjct    12 GFMHCSRAGAPGSLQPEVVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAEGLECAKTCQ   71

Query   737 GFMHCTTSGTLGSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796
            ||||||+||  ||||||| |     |||||#|||||||||| ||| |||||+|||||||||
Sbjct    12 GFMHCTSSGRPGSLLPDTALP----HRSKR#SLSCRPPMVKFVCPHDNPRAEGLECAKTCQ   67

Query   737 GFMHCTTSGTLGSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796
            |||||+ |   |+||||       | | ||#||+|| ||| |+|| +||||+|||||||||
Sbjct   731 GFMHCSKSKAPGALLPDVFTDEKPSARIKR#SLTCRSPMVTLICPENNPRAEGLECAKTCQ  790

Query   739 MHCTTSGTL-GSLLPDTVLSSPLSHRSKR#SLSCRPPMVKLVCPADNPRAQGLECAKTCQ  796
            +|| ||  +  |  |+  |        +|#|+ | | +++| |        |+|||+|||
Sbjct   822 LHCLTSSMMMTSHCPEVQL--------RR#SVQCAPGLIRLNCDTGE---NGIECARTCQ  869

[PubMed ID: 11042159] ... Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M, Konno H, Okazaki Y, Muramatsu M, Hayashizaki Y, Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Genome Res. 2000 Oct;10(10):1617-30.

[PubMed ID: 11076861] ... Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K, Togawa Y, RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Genome Res. 2000 Nov;10(11):1757-71.

[PubMed ID: 11217851] ... Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W, Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F, Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M, Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N, Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C, Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA, Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J, Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF, Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L, Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S, Hayashizaki Y, Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90.

[PubMed ID: 12466851] ... Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002 Dec 5;420(6915):563-73.

[PubMed ID: 16141072] ... Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y, The transcriptional landscape of the mammalian genome. Science. 2005 Sep 2;309(5740):1559-63.

[PubMed ID: 16141073] ... Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C, Antisense transcription in the mammalian transcriptome. Science. 2005 Sep 2;309(5740):1564-6.