Summary

Top-ranked sequences

Query     1 MTLQ#CTKSAGHWRMVVWDEEGFQGRRHEFTAECP   34
            ||||#||||||||||||||||||||||||||||||
Query     1 MTLQ#CTKSAGHWRMVVWDEEGFQGRRHEFTAECP   34

Query     1 MTLQ#CTKSAGHWRMVVWDEEGFQGRRHEFTAECP   34
            ||||#|||||||||+||||||||||||||||||||
Sbjct     1 MTLQ#CTKSAGHWRVVVWDEEGFQGRRHEFTAECP   34

Query     1 MTLQ#CTKSAGHWRMVVWDEEGFQGRRHEFTAECP   34
            ||||#||||||||+||||||+||||||||||||||
Sbjct    12 MTLQ#CTKSAGHWKMVVWDEDGFQGRRHEFTAECP   45

Query     1 MTLQ#CTKSAGHWRMVVWDEEGFQGRRHEFTAECP   34
            ||||#||||||||++||||||||||||||||||||
Sbjct     1 MTLQ#CTKSAGHWKIVVWDEEGFQGRRHEFTAECP   34

Query     1 MTLQ#CTKSAGHWRMVVWDEEGFQGRRHEFTAECP   34
            |+||#||||||||++||||||||||||||||||||
Sbjct     1 MSLQ#CTKSAGHWKIVVWDEEGFQGRRHEFTAECP   34

Query     1 MTLQ#CTKSAGHWRMVVWDEEGFQGRRHEFTAECP   34
            ||||#|||||| |+||||||+||||||||||||||
Sbjct     1 MTLQ#CTKSAGPWKMVVWDEDGFQGRRHEFTAECP   34

Query     1 MTLQ#CTKSAGHWRMVVWDEEGFQGRRHEFTAECP   34
            ||||#|||||| |+||||||+||||||||||||||
Sbjct     1 MTLQ#CTKSAGPWKMVVWDEDGFQGRRHEFTAECP   34

Query     1 MTLQ#CTKSAGHWRMVVWDEEGFQGRRHEFTAECP   34
            |+ |#||||+|||++||||+|||||||||||||||
Sbjct     1 MSQQ#CTKSSGHWKIVVWDQEGFQGRRHEFTAECP   34

Query     1 MTLQ#CTKSAGHWRMVVWDEEGFQGRRHEFTAEC   33
            ||  #||| +|||+++||||| ||||||||||||
Sbjct     1 MTQH#CTKFSGHWKIIVWDEECFQGRRHEFTAEC   33

Query     1 MTLQ#CTKSAGHWRMVVWDEEGFQGRRHEFTAEC   33
            ||  #||| +|||+++|+||| |||||||||+||
Sbjct     1 MTHH#CTKFSGHWKIIVFDEECFQGRRHEFTSEC   33

Query     1 MTLQ#CTKSAGHWRMVVWDEEGFQGRRHEFTAEC   33
            ||  #||| +|||+++|+||| |||| ||||+||
Sbjct     1 MTHH#CTKFSGHWKIIVYDEECFQGRHHEFTSEC   33

Query     1 MTLQ#CTKSAGHWRMVVWDEEGFQG   24
            ||||#|||||||||+||||||||||
Sbjct     1 MTLQ#CTKSAGHWRVVVWDEEGFQG   24

Query     8 SAGHWRMVVWDEEGFQGRRHEFTAEC   33
            |+| |++|||||  |||+||||| +|
Sbjct     8 SSGLWKIVVWDEPFFQGKRHEFTTDC   33

Query     8 SAGHWRMVVWDEEGFQGRRHEFTAEC   33
            |+| |++|||||  |||+||||| +|
Sbjct     8 SSGLWKIVVWDEPFFQGKRHEFTTDC   33

Query     1 MTLQ#CTKSAGHWRMVVWDEEGFQGRRHEFTAECP   34
            ||  #  ++ | |+| ||+|| |||+| ||  |||
Sbjct     1 MTSH#PMETQGQWKMTVWEEENFQGKRCEFHLECP   34

Query     8 SAGHWRMVVWDEEGFQGRRHEFTAECP   34
            | | |++ ++|+| |||+| |||+ ||
Sbjct    27 SVGPWKITIYDQENFQGKRMEFTSSCP   53

Query     8 SAGHWRMVVWDEEGFQGRRHEFTAECP   34
            | | |++ ++|+| |||+| |||+ ||
Sbjct    10 SLGPWKITIYDQENFQGKRMEFTSSCP   36

Query     8 SAGHWRMVVWDEEGFQGRRHEFTAEC   33
            | | |++ ++|+| |||+| |||+ |
Sbjct    10 SLGPWKITIYDQENFQGKRMEFTSSC   35

Query    10 GHWRMVVWDEEGFQGRRHEFTAECP   34
            | +++ ||+|| ||| | ||  |||
Sbjct     3 GQFKITVWEEENFQGERCEFLMECP   27

Query    10 GHWRMVVWDEEGFQGRRHEFTAEC   33
            | |++ |+|+| |||+| |||+ |
Sbjct    12 GPWKITVYDQENFQGKRMEFTSSC   35

Query    10 GHWRMVVWDEEGFQGRRHEFTAEC   33
            | |++ |+|+| |||+| |||+ |
Sbjct    12 GPWKITVYDQENFQGKRMEFTSSC   35

Query    10 GHWRMVVWDEEGFQGRRHEFTAEC   33
            | +|+||+++| ||||| ||+ ||
Sbjct    55 GSYRLVVFEQENFQGRRVEFSGEC   78

Query    10 GHWRMVVWDEEGFQGRRHEFTAECP   34
            | ++++|++ | |||+| | |||||
Sbjct    22 GSYKVIVYEMENFQGKRCELTAECP   46

Query    10 GHWRMVVWDEEGFQGRRHEFTAEC   33
            |++|+||++ | ||||| ||+ ||
Sbjct    57 GNYRLVVFELENFQGRRAEFSGEC   80

Query    10 GHWRMVVWDEEGFQGRRHEFTAEC   33
            | +++||+++| ||||| ||+ ||
Sbjct    54 GSYKLVVFEQENFQGRRVEFSGEC   77

Query    10 GHWRMVVWDEEGFQGRRHEFTAEC   33
            | +++||+++| ||||| ||+ ||
Sbjct    53 GSYKLVVFEQENFQGRRVEFSGEC   76

[PubMed ID: 11042159] ... Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M, Konno H, Okazaki Y, Muramatsu M, Hayashizaki Y, Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Genome Res. 2000 Oct;10(10):1617-30.

[PubMed ID: 11076861] ... Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K, Togawa Y, RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Genome Res. 2000 Nov;10(11):1757-71.

[PubMed ID: 11217851] ... Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W, Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F, Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M, Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N, Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C, Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA, Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J, Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF, Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L, Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S, Hayashizaki Y, Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90.

[PubMed ID: 12466851] ... Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002 Dec 5;420(6915):563-73.

[PubMed ID: 16141072] ... Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y, The transcriptional landscape of the mammalian genome. Science. 2005 Sep 2;309(5740):1559-63.

[PubMed ID: 16141073] ... Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C, Antisense transcription in the mammalian transcriptome. Science. 2005 Sep 2;309(5740):1564-6.