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XSB1037 : hypothetical protein [synthetic construct]

[ CaMP Format ]

This entry is computationally expanded from SB0063

* Basic Information

Organismsynthetic construct
Protein Nameshypothetical protein
Gene NamesITGB1
Gene LocusNot available
GO FunctionNot available
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
CAL38075 N/A N/A N/A N/A N/A N/A N/A

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 798 aa

Average Mass: 88.479 kDa

Monoisotopic Mass: 88.421 kDa

2. Domain Information

Annotated Domains: Not Available.

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
Integrin_beta 1. 344641121.50
EGF_2 1. 46650011.80.13
EGF_2 2. 51655321.30.0041
EGF_2 3. 56059021.90.0027
EGF_2 4. 59963030.85.6e-06
Integrin_B_tail 1. 640728158.81.6e-44
Integrin_b_cyt 1. 752797112.31.6e-30
--- cleavage 789 (inside Integrin_b_cyt 752..797) ---
--- cleavage 791 (inside Integrin_b_cyt 752..797) ---
--- cleavage 778 (inside Integrin_b_cyt 752..797) ---
--- cleavage 777 (inside Integrin_b_cyt 752..797) ---

3. Sequence Information

Fasta Sequence: XSB1037.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Not Available.

* Cleavage Information

4 [sites]

Cleavage sites (±10aa)

[Site 1] NPIYKSAVTT789-VVNPKYEGK

Thr789 Val

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Asn780Pro781Ile782Tyr783Lys784Ser785Ala786Val787Thr788Thr789
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Val790Val791Asn792Pro793Lys794Tyr795Glu796Gly797Lys798-

Sequence conservation (by blast)

[Site 2] IYKSAVTTVV791-NPKYEGK

Val791 Asn

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Ile782Tyr783Lys784Ser785Ala786Val787Thr788Thr789Val790Val791
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Asn792Pro793Lys794Tyr795Glu796Gly797Lys798---

Sequence conservation (by blast)

[Site 3] EKMNAKWDTG778-ENPIYKSAVT

Gly778 Glu

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Glu769Lys770Met771Asn772Ala773Lys774Trp775Asp776Thr777Gly778
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Glu779Asn780Pro781Ile782Tyr783Lys784Ser785Ala786Val787Thr788

Sequence conservation (by blast)

[Site 4] KEKMNAKWDT777-GENPIYKSAV

Thr777 Gly

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Lys768Glu769Lys770Met771Asn772Ala773Lys774Trp775Asp776Thr777
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Gly778Glu779Asn780Pro781Ile782Tyr783Lys784Ser785Ala786Val787

Sequence conservation (by blast)

* References

[PubMed ID: 11076863] Hartley JL, Temple GF, Brasch MA, DNA cloning using in vitro site-specific recombination. Genome Res. 2000 Nov;10(11):1788-95.

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