XSB2359 : protein kinase C, beta 1, isoform CRA_a [Rattus norvegicus]
[ CaMP Format ]
This entry is computationally expanded from SB0039
* Basic Information
| Organism | Rattus norvegicus (Norway rat) |
| Protein Names | protein kinase C; beta 1; isoform CRA_a |
| Gene Names | Prkcb1 |
| Gene Locus | Not available |
| GO Function | Not available |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 544 aa
Average Mass: 62.447 kDa
Monoisotopic Mass: 62.406 kDa
2. Domain Information
Annotated Domains: Not Available.
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
|---|---|---|---|---|
| C1_1 1. | 1 | 25 | -9.4 | 0.39 |
| C2 1. | 44 | 131 | 128.3 | 2.5e-35 |
| --- cleavage 182 --- | ||||
| --- cleavage 191 --- | ||||
| Pkinase 1. | 213 | 471 | 262.2 | 1.2e-75 |
| Pkinase_C 1. | 491 | 536 | 55.6 | 1.9e-13 |
3. Sequence Information
Fasta Sequence: XSB2359.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
2 [sites]
Cleavage sites (±10aa)
[Site 1] RQKFERAKIG182-QGTKAPEEKT
Gly182 
Gln
 |
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Arg173 | Gln174 | Lys175 | Phe176 | Glu177 | Arg178 | Ala179 | Lys180 | Ile181 | Gly182 |
 |
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Gln183 | Gly184 | Thr185 | Lys186 | Ala187 | Pro188 | Glu189 | Glu190 | Lys191 | Thr192 |
Sequence conservation (by blast)
Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| EGEYFNVPVPPEGSEGNEELRQKFERAKIGQGTKAPEEKTANTISKFDNNGNRDRMKLTD |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | N/A | 126.00 | 10 | K |
| 2 | Mus musculus | 126.00 | 4 | protein kinase C, beta 1 |
| 3 | Rattus norvegicus | 126.00 | 4 | unnamed protein product |
| 4 | Oryctolagus cuniculus | 123.00 | 3 | KPCB_RABIT Protein kinase C beta type (PKC-beta) ( |
| 5 | Macaca mulatta | 120.00 | 6 | PREDICTED: protein kinase C, beta 1 isoform 4 |
| 6 | Canis familiaris | 120.00 | 2 | PREDICTED: similar to Protein kinase C, beta type |
| 7 | Bos taurus | 119.00 | 3 | Unknown (protein for MGC:148660) |
| 8 | Homo sapiens | 118.00 | 9 | protein kinase C, beta 1, isoform CRA_c |
| 9 | Monodelphis domestica | 116.00 | 3 | PREDICTED: similar to Protein kinase C beta type ( |
| 10 | Gallus gallus | 110.00 | 3 | PREDICTED: similar to protein kinase C beta-1 |
| 11 | Latimeria chalumnae | 102.00 | 2 | protein kinase C beta 1 |
| 12 | Protopterus dolloi | 100.00 | 2 | protein kinase C beta 1 |
| 13 | Tetraodon nigroviridis | 95.10 | 3 | unnamed protein product |
| 14 | Danio rerio | 92.80 | 7 | protein kinase C, beta 1 |
| 15 | Scyliorhinus canicula | 89.40 | 2 | protein kinase C |
| 16 | Petromyzon marinus | 63.50 | 1 | protein kinase C |
| 17 | synthetic construct | 56.20 | 1 | protein kinase C alpha |
| 18 | Takifugu rubripes | 53.90 | 1 | protein kinase C, alpha type |
| 19 | Xenopus tropicalis | 52.80 | 1 | hypothetical protein LOC780209 |
| 20 | Xenopus laevis | 50.40 | 1 | protein kinase C, alpha |
| 21 | Myxine glutinosa | 46.60 | 1 | protein kinase C |
| 22 | Caenorhabditis briggsae | 39.70 | 1 | Hypothetical protein CBG16150 |
| 23 | Aplysia californica | 35.80 | 1 | KPC1_APLCA Calcium-dependent protein kinase C (APL |
| 24 | Branchiostoma lanceolatum | 32.30 | 1 | protein kinase C |
Top-ranked sequences
| organism | matching |
|---|---|
| N/A | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 |
| Mus musculus | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 |
| Rattus norvegicus | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 |
| Oryctolagus cuniculus | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||||||||||||||||||||||||||||#|||| ||||| ||||||||||||||||||| Sbjct 282 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKTPEEKTTNTISKFDNNGNRDRMKLTD 341 |
| Macaca mulatta | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||||||||||||||||||||||||||| #|||| ||||| ||+|||||||||||||||| Sbjct 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIS#QGTKVPEEKTTNTVSKFDNNGNRDRMKLTD 212 |
| Canis familiaris | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||||||||||||||||||||||||||| #|||||||||| ||||| ||||||||||||| Sbjct 274 EGEYFNVPVPPEGSEGNEELRQKFERAKIS#QGTKAPEEKTTNTISKLDNNGNRDRMKLTD 333 |
| Bos taurus | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||||||||||||||||||||||||||||# | | ||||| ||||||||||||||||||| Sbjct 282 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#PGPKTPEEKTTNTISKFDNNGNRDRMKLTD 341 |
| Homo sapiens | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||||||||||||| ||||||||||||| #|||| ||||| ||+|||||||||||||||| Sbjct 153 EGEYFNVPVPPEGSEANEELRQKFERAKIS#QGTKVPEEKTTNTVSKFDNNGNRDRMKLTD 212 |
| Monodelphis domestica | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||||||||||| ||||||||||||||||#|||| |||||| ||| ||||||||||||| Sbjct 279 EGEYFNVPVPPEGEEGNEELRQKFERAKIG#QGTKVTEEKTANAISKIDNNGNRDRMKLTD 338 |
| Gallus gallus | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||||||||||| ||||||||||||||||# |+|| +||| | ||||||||+||||||+| Sbjct 281 EGEYFNVPVPPEGEEGNEELRQKFERAKIG#TGSKAADEKTTNAISKFDNNGSRDRMKLSD 340 |
| Latimeria chalumnae | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||||||||||| |||||||+||||||||# |+|| |+| |+ ||| |||||||+||+| Sbjct 204 EGEYFNVPVPPEGEEGNEELRKKFERAKIG#PGSKATEDKVKNSSSKFGNNGNRDRIKLSD 263 |
| Protopterus dolloi | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||||||||||| ||||||||||||||||# | +| |+| || +||||||||||+||+| Sbjct 213 EGEYFNVPVPPEGEEGNEELRQKFERAKIG#PGAEAAEDKIANA-AKFDNNGNRDRVKLSD 271 |
| Tetraodon nigroviridis | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||||||||||| ||||||||||||||||# | | + |+|| |+||+|||+||||| | Sbjct 218 EGEYFNVPVPPEGEEGNEELRQKFERAKIG#PG-KNTDGKSANAASRFDSNGNQDRMKLAD 276 |
| Danio rerio | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||||||||||| ||||||||||||||| # | + ++| |||||+|||||||||+| Sbjct 281 EGEYFNVPVPPEGEEGNEELRQKFERAKI-#-GPSKTDGSSSNAISKFDSNGNRDRMKLSD 338 |
| Scyliorhinus canicula | Query 153 EGEYFNVPVPPE-GSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLT 211 ||||+||||||| ||||||||||||||+||# |+|| ||| +++ || | ||||||||| Sbjct 202 EGEYYNVPVPPEEDSEGNEELRQKFERARIG#PGSKAAEEKRSSSWSKID-NGNRDRMKLA 260 Query 212 D 212 | Query 212 D 212 |
| Petromyzon marinus | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTK--APEEKTANTISKFDNNGNRDRMKL 210 ||||+|||+ |+ +|+ |+|+|||+|++|# | | +|+ ||++| || | ||+| Sbjct 212 EGEYYNVPIAPDIEDGDTEMRRKFEKARLG#PSVKPRASDERRANSLSAILNNANVDRVKA 271 Query 211 TD 212 | Sbjct 272 DD 273 |
| synthetic construct | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||+|||+| ||| |||||||+||+|# | + + + + + | ||+|||| Sbjct 282 EGEYYNVPIPEGDEEGNMELRQKFEKAKLG#---PAGNKVISPSEDRKQPSNNLDRVKLTD 338 |
| Takifugu rubripes | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||+|||+| | + | |||||||+||+|#|| | | +|| ||++| | Sbjct 280 EGEYYNVPIP-EVDDVNLELRQKFEKAKLG#QGKKVITPSDHRRFSL--PSGNMDRVRLND 336 |
| Xenopus tropicalis | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||+|||+| | +|| |||||||+||+|# | +| | | ++||| Sbjct 286 EGEYYNVPIPEEEDDGNIELRQKFEKAKLG#PAGNKVISPTDERRPYVPSN-NIDSVRLTD 344 |
| Xenopus laevis | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||+|||+| | +|| |||||||+||+|# | +| | | ++||| Sbjct 286 EGEYYNVPIP-EADDGNLELRQKFEKAKLG#PAGNKVINPTGERRPYIPSN-NIDSIRLTD 343 |
| Myxine glutinosa | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||+|||| ||| || ||||+ +|++| #+ | + + | + ||+ | | Sbjct 203 EGEYYNVPVAPEGEEG-LELRQRLQRSQIA#RSDKNKQSPAKDQPSDSASLSGLDRVNLED 261 |
| Caenorhabditis briggsae | Query 153 EGEYFNVPVPPEGSEGNEELRQKF-ERAKIG#QGTKA--PEEKTANTISKFDNNGNRDRMK 209 |||++|+ + || | |++|+| + || #+ + | | | | | | ||| +| Sbjct 352 EGEFYNINITPEYDEDMEKVRKKMNDNFKIS#RDSSAGKPRESTPRATSTSLTNTNRDVIK 411 Query 210 LTD 212 +| Sbjct 412 ASD 414 |
| Aplysia californica | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFD 200 |||++ ||| + +| +|++ | |+ | # + || +|| | Sbjct 266 EGEFYGVPVTDDITESIQEIKSKMHRSSIS#SEKRYPEPDKVQNMSKQD 313 |
| Branchiostoma lanceolatum | Query 153 EGEYFNVPVPPEGSEGNEELRQKFERAKIG#QGTKAPEEKTANTISKFDNNGNRDRMKLTD 212 ||||+|||+ | | +|++ ++ |+ #+ | ++ |+ | |+ | || | Sbjct 213 EGEYYNVPIADE-EENVAKLKEHLQKQKLD#EQRKQKSKR-----SEECNIGSLDHMKAAD 266 |
[Site 2] GQGTKAPEEK191-TANTISKFDN
Lys191 Thr
|
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Gly182 | Gln183 | Gly184 | Thr185 | Lys186 | Ala187 | Pro188 | Glu189 | Glu190 | Lys191 |
|
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Thr192 | Ala193 | Asn194 | Thr195 | Ile196 | Ser197 | Lys198 | Phe199 | Asp200 | Asn201 |
Sequence conservation (by blast) Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| PPEGSEGNEELRQKFERAKIGQGTKAPEEKTANTISKFDNNGNRDRMKLTDFNFLMVLGK |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | N/A | 125.00 | 10 | K |
| 2 | Rattus norvegicus | 125.00 | 4 | unnamed protein product |
| 3 | Mus musculus | 125.00 | 4 | protein kinase C, beta 1 |
| 4 | Oryctolagus cuniculus | 122.00 | 3 | KPCB_RABIT Protein kinase C beta type (PKC-beta) ( |
| 5 | Macaca mulatta | 119.00 | 6 | PREDICTED: protein kinase C, beta 1 isoform 4 |
| 6 | Canis familiaris | 119.00 | 3 | PREDICTED: similar to Protein kinase C, beta type |
| 7 | Homo sapiens | 117.00 | 8 | protein kinase C, beta 1, isoform CRA_c |
| 8 | Bos taurus | 117.00 | 3 | Unknown (protein for MGC:148660) |
| 9 | Monodelphis domestica | 114.00 | 3 | PREDICTED: similar to Protein kinase C beta type ( |
| 10 | Gallus gallus | 108.00 | 3 | PREDICTED: similar to protein kinase C beta-1 |
| 11 | Latimeria chalumnae | 100.00 | 2 | protein kinase C beta 1 |
| 12 | Protopterus dolloi | 99.00 | 2 | protein kinase C beta 1 |
| 13 | Tetraodon nigroviridis | 93.60 | 2 | unnamed protein product |
| 14 | Danio rerio | 91.30 | 6 | protein kinase C, beta 1 |
| 15 | Scyliorhinus canicula | 90.50 | 2 | protein kinase C |
| 16 | Petromyzon marinus | 63.90 | 1 | protein kinase C |
| 17 | synthetic construct | 57.40 | 1 | protein kinase C alpha |
| 18 | Takifugu rubripes | 55.10 | 1 | protein kinase C, alpha type |
| 19 | Xenopus laevis | 51.60 | 1 | protein kinase C, alpha |
| 20 | Xenopus tropicalis | 50.80 | 1 | hypothetical protein LOC780209 |
| 21 | Caenorhabditis briggsae | 43.10 | 1 | Hypothetical protein CBG16150 |
| 22 | Myxine glutinosa | 40.80 | 1 | protein kinase C |
| 23 | Branchiostoma lanceolatum | 35.80 | 1 | protein kinase C |
| 24 | Aplysia californica | 35.80 | 1 | KPC1_APLCA Calcium-dependent protein kinase C (APL |
| 25 | Aedes aegypti | 35.00 | 1 | protein kinase c |
Top-ranked sequences
| organism | matching |
|---|---|
| N/A | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 |
| Rattus norvegicus | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 |
| Mus musculus | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 |
| Oryctolagus cuniculus | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 ||||||||||||||||||||||||| ||||#| |||||||||||||||||||||||||||| Sbjct 291 PPEGSEGNEELRQKFERAKIGQGTKTPEEK#TTNTISKFDNNGNRDRMKLTDFNFLMVLGK 350 |
| Macaca mulatta | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 |||||||||||||||||||| |||| ||||#| ||+||||||||||||||||||||||||| Sbjct 162 PPEGSEGNEELRQKFERAKISQGTKVPEEK#TTNTVSKFDNNGNRDRMKLTDFNFLMVLGK 221 |
| Canis familiaris | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 |||||||||||||||||||| |||||||||#| ||||| |||||||||||||||||||||| Sbjct 283 PPEGSEGNEELRQKFERAKISQGTKAPEEK#TTNTISKLDNNGNRDRMKLTDFNFLMVLGK 342 |
| Homo sapiens | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 |||||| ||||||||||||| |||| ||||#| ||+||||||||||||||||||||||||| Sbjct 162 PPEGSEANEELRQKFERAKISQGTKVPEEK#TTNTVSKFDNNGNRDRMKLTDFNFLMVLGK 221 |
| Bos taurus | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 ||||||||||||||||||||| | | ||||#| |||||||||||||||||||||||||||| Sbjct 291 PPEGSEGNEELRQKFERAKIGPGPKTPEEK#TTNTISKFDNNGNRDRMKLTDFNFLMVLGK 350 |
| Monodelphis domestica | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 |||| |||||||||||||||||||| |||#||| ||| |||||||||||||||||||||| Sbjct 288 PPEGEEGNEELRQKFERAKIGQGTKVTEEK#TANAISKIDNNGNRDRMKLTDFNFLMVLGK 347 |
| Gallus gallus | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 |||| |||||||||||||||| |+|| +||#| | ||||||||+||||||+|||||||||| Sbjct 290 PPEGEEGNEELRQKFERAKIGTGSKAADEK#TTNAISKFDNNGSRDRMKLSDFNFLMVLGK 349 |
| Latimeria chalumnae | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 |||| |||||||+|||||||| |+|| |+|# |+ ||| |||||||+||+|||||||||| Sbjct 213 PPEGEEGNEELRKKFERAKIGPGSKATEDK#VKNSSSKFGNNGNRDRIKLSDFNFLMVLGK 272 |
| Protopterus dolloi | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 |||| |||||||||||||||| | +| |+|# || +||||||||||+||+|||||||||| Sbjct 222 PPEGEEGNEELRQKFERAKIGPGAEAAEDK#IANA-AKFDNNGNRDRVKLSDFNFLMVLGK 280 |
| Tetraodon nigroviridis | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 |||| |||||||||||||||| | | + |#+|| |+||+|||+||||| |||||||||| Sbjct 227 PPEGEEGNEELRQKFERAKIGPG-KNTDGK#SANAASRFDSNGNQDRMKLADFNFLMVLGK 285 |
| Danio rerio | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 |||| |||||||||||||||| + #++| |||||+|||||||||+|||||||||| Sbjct 290 PPEGEEGNEELRQKFERAKIGPSKT--DGS#SSNAISKFDSNGNRDRMKLSDFNFLMVLGK 347 |
| Scyliorhinus canicula | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 | | ||||||||||||||+|| |+|| |||# +++ || | ||||||||| |||||||||| Sbjct 212 PEEDSEGNEELRQKFERARIGPGSKAAEEK#RSSSWSKID-NGNRDRMKLADFNFLMVLGK 270 |
| Petromyzon marinus | Query 163 PEGSEGNEELRQKFERAKIGQGTK--APEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLG 220 |+ +|+ |+|+|||+|++| | | +|+# ||++| || | ||+| ||||||||| Sbjct 222 PDIEDGDTEMRRKFEKARLGPSVKPRASDER#RANSLSAILNNANVDRVKADDFNFLMVLG 281 Query 221 K 221 | Query 221 K 221 |
| synthetic construct | Query 163 PEGSE-GNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 ||| | || |||||||+||+| | + # + + + + | ||+||||||||||||| Sbjct 291 PEGDEEGNMELRQKFEKAKLGP---AGNKV#ISPSEDRKQPSNNLDRVKLTDFNFLMVLGK 347 |
| Takifugu rubripes | Query 163 PEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 || + | |||||||+||+||| | # | +|| ||++| ||||| +||| Sbjct 289 PEVDDVNLELRQKFEKAKLGQGKKVITPS#DHRRFSL--PSGNMDRVRLNDFNFLALLGK 345 |
| Xenopus laevis | Query 163 PEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 || +|| |||||||+||+| #| +| | | ++|||| ||||||| Sbjct 295 PEADDGNLELRQKFEKAKLGPAGNKVINP#TGERRPYIPSN-NIDSIRLTDFCFLMVLGK 352 |
| Xenopus tropicalis | Query 162 PPEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 | | +|| |||||||+||+| #| +| | | ++||||+||||||| Sbjct 295 PEEEDDGNIELRQKFEKAKLGPAGNKVISP#TDERRPYVPSN-NIDSVRLTDFSFLMVLGK 353 |
| Caenorhabditis briggsae | Query 163 PEGSEGNEELRQKF-ERAKIGQGTKA--PEEK#TANTISKFDNNGNRDRMKLTDFNFLMVL 219 || | |++|+| + || + + | | | #| | | ||| +| +||||| || Sbjct 362 PEYDEDMEKVRKKMNDNFKISRDSSAGKPRES#TPRATSTSLTNTNRDVIKASDFNFLTVL 421 Query 220 GK 221 || Query 220 GK 221 |
| Myxine glutinosa | Query 163 PEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 ||| || | |||+ +|++| + | + # + | + ||+ | || || |||| Sbjct 213 PEGEEGLE-LRQRLQRSQIARSDKNKQSP#AKDQPSDSASLSGLDRVNLEDFVFLTVLGK 270 |
| Branchiostoma lanceolatum | Query 167 EGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 | +|++ ++ |+ + | ++#+ | |+ | || |||||||||| Sbjct 226 ENVAKLKEHLQKQKLDEQRKQKSKR#SEEC-----NIGSLDHMKAADFNFLMVLGK 275 |
| Aplysia californica | Query 166 SEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 +| +|++ | |+ | + || # +|| +| ++ +||||| |||| Sbjct 279 TESIQEIKSKMHRSSISSEKRYPEPD#KVQNMSK------QDIVRASDFNFLTVLGK 328 |
| Aedes aegypti | Query 163 PEGSEGNEELRQKFERAKIGQGTKAPEEK#TANTISKFDNNGNRDRMKLTDFNFLMVLGK 221 | || + ++ | + | ||| # + | | +| ++ ||||||||||| Sbjct 237 PVPEEGTDLVQLKSQMRKTSISKKAPVLC#DKDVPH---NMGKKDVIRATDFNFLMVLGK 292 |
* References
[PubMed ID: 15632090] Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P, Sutton G, Gene and alternative splicing annotation with AIR. Genome Res. 2005 Jan;15(1):54-66.