XSB2609 : vimentin, isoform CRA_b [Rattus norvegicus]
[ CaMP Format ]
This entry is computationally expanded from SB0037
* Basic Information
| Organism | Rattus norvegicus (Norway rat) |
| Protein Names | vimentin; isoform CRA_b |
| Gene Names | Vim |
| Gene Locus | Not available |
| GO Function | Not available |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 466 aa
Average Mass: 53.701 kDa
Monoisotopic Mass: 53.668 kDa
2. Domain Information
Annotated Domains: Not Available.
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
|---|---|---|---|---|
| Filament_head 1. | 6 | 101 | 110.6 | 5.4e-30 |
| --- cleavage 91 (inside Filament_head 6..101) --- | ||||
| --- cleavage 63 (inside Filament_head 6..101) --- | ||||
| Filament 1. | 102 | 410 | 611.2 | 1e-180 |
| --- cleavage 264 (inside Filament 102..410) --- | ||||
3. Sequence Information
Fasta Sequence: XSB2609.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
3 [sites]
Cleavage sites (±10aa)
[Site 1] DSVDFSLADA91-INTEFKNTRT
Ala91 
Ile
 |
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Asp82 | Ser83 | Val84 | Asp85 | Phe86 | Ser87 | Leu88 | Ala89 | Asp90 | Ala91 |
 |
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Ile92 | Asn93 | Thr94 | Glu95 | Phe96 | Lys97 | Asn98 | Thr99 | Arg100 | Thr101 |
Sequence conservation (by blast)
Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| VTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKV |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | Mus musculus | 117.00 | 30 | unnamed protein product |
| 2 | N/A | 117.00 | 25 | - |
| 3 | Rattus norvegicus | 116.00 | 10 | vimentin |
| 4 | Homo sapiens | 115.00 | 36 | vimentin |
| 5 | Canis familiaris | 115.00 | 18 | PREDICTED: similar to vimentin isoform 1 |
| 6 | Macaca mulatta | 115.00 | 7 | PREDICTED: vimentin |
| 7 | Macaca fascicularis | 115.00 | 6 | VIME_MACFA Vimentin sp |
| 8 | Pan troglodytes | 115.00 | 6 | vimentin |
| 9 | synthetic construct | 115.00 | 2 | vimentin |
| 10 | Pan troglodytes verus | 115.00 | 1 | vimentin |
| 11 | Bos taurus | 114.00 | 11 | vimentin |
| 12 | Ovis aries | 114.00 | 2 | vimentin |
| 13 | Monodelphis domestica | 108.00 | 6 | PREDICTED: similar to vimentin |
| 14 | Gallus gallus | 89.70 | 5 | vimentin |
| 15 | Acipenser baerii | 86.70 | 2 | vimentin |
| 16 | Xenopus tropicalis | 83.20 | 8 | Unknown (protein for IMAGE:7605834) |
| 17 | Xenopus laevis | 82.80 | 21 | Vim1 protein |
| 18 | Daboia russellii | 82.00 | 1 | AF447708_1 vimentin |
| 19 | Oncorhynchus mykiss | 80.50 | 2 | VIME_ONCMY Vimentin emb |
| 20 | Cyprinus carpio | 77.40 | 1 | VIME_CYPCA Vimentin gb |
| 21 | Danio rerio | 77.00 | 24 | vimentin |
| 22 | Protopterus aethiopicus | 75.50 | 2 | type III desmin |
| 23 | Sus scrofa | 70.50 | 3 | desmin |
| 24 | Cricetulus griseus | 70.50 | 1 | vimentin |
| 25 | Tetraodon nigroviridis | 69.70 | 7 | unnamed protein product |
| 26 | Lampetra fluviatilis | 68.90 | 1 | intermediate filament protein type III |
| 27 | Canis lupus familiaris | 68.20 | 1 | desmin |
| 28 | Mesocricetus auratus | 67.40 | 1 | DESM_MESAU Desmin gb |
| 29 | Scyliorhinus stellaris | 62.80 | 2 | vimentin |
| 30 | Takifugu rubripes | 62.80 | 1 | TPA: desmin |
| 31 | Torpedo californica | 61.20 | 1 | IF3T_TORCA Type III intermediate filament emb |
| 32 | Pongo pygmaeus | 57.00 | 1 | hypothetical protein |
| 33 | Petromyzon marinus | 49.30 | 3 | neurofilament subunit NF-95 |
| 34 | Styela clava | 46.20 | 1 | intermediate filament protein A |
Top-ranked sequences
| organism | matching |
|---|---|
| Mus musculus | Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| N/A | Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Rattus norvegicus | Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||||+|||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 VTRSSAVRLRSSMPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Homo sapiens | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Canis familiaris | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Macaca mulatta | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Macaca fascicularis | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Pan troglodytes | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| synthetic construct | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Pan troglodytes verus | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Bos taurus | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 63 TRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Ovis aries | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 63 TRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
| Monodelphis domestica | Query 63 TRSSAVRLRSS--VPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDK 120 ||||| ||||| +|||||||||||||||||#||||||||||||||||||||||||||||| Sbjct 62 TRSSAARLRSSAPIPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDK 121 Query 121 V 121 | Query 121 V 121 |
| Gallus gallus | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |++++||||||+| +|+ |+|||+||||#|||||| |||||||||||||||||||||| Sbjct 58 TKATSVRLRSSMPPMRM-HDAVDFTLADA#INTEFKANRTNEKVELQELNDRFANYIDKV 115 |
| Acipenser baerii | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |+||+ ||||| | ||| +++||+|+||#|||||| ||||| |+| ||||||+||||| Sbjct 53 TKSSSTRLRSSAPQTRLLSETLDFALSDA#INTEFKANRTNEKAEMQHLNDRFASYIDKV 111 |
| Xenopus tropicalis | Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | +||+||||||+| || |+|||+||||#+| |+| ||||| |+|||||||||+|||| Sbjct 82 VFKSSSVRLRSSLPPARLA-DTVDFTLADA#VNLEYKANRTNEKAEMQELNDRFANFIDKV 140 |
| Xenopus laevis | Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | +||+||||||+| |+ |||||+||||#+| ||| ||||| |+ ||||||||+|||| Sbjct 56 VFKSSSVRLRSSLPPARMA-DSVDFALADA#VNLEFKANRTNEKAEMMELNDRFANFIDKV 114 |
| Daboia russellii | Query 65 SSAVRLRSSVPGVRLLQDS-VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | |+|+||| | +| |+ ||||||||#|||||| ||||| |||||||||||||||| Sbjct 59 SKAMRVRSSFPPMRTGGDAMVDFSLADA#INTEFKANRTNEKAELQELNDRFANYIDKV 116 |
| Oncorhynchus mykiss | Query 65 SSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | |||||| | || |+|||+|+||#||+||| ||||| |+| ||||||+||||| Sbjct 61 SKNVRLRSSAPMPRLSSDTVDFALSDA#INSEFKANRTNEKAEMQHLNDRFASYIDKV 117 |
| Cyprinus carpio | Query 65 SSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | |+||| | || +++|| ||||#|||||| ||||| |+| ||||||+||||| Sbjct 56 SKGARVRSSGPLPRLATETLDFGLADA#INTEFKTNRTNEKAEMQHLNDRFASYIDKV 112 |
| Danio rerio | Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | | +|+|| | || |++|| ||+|#|||||| ||||| |+| ||||||+||||| Sbjct 53 VYASKGLRVRSGAPLPRLATDTLDFGLAEA#INTEFKANRTNEKAEMQHLNDRFASYIDKV 112 |
| Protopterus aethiopicus | Query 62 VTRSSAVRLRSS-----VPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFAN 116 |+||||| || +| + +|+|||||||#+| || |||||| ||||||||||| Sbjct 46 VSRSSAVPSYSSFRATRIPAAKTALESMDFSLADA#MNQEFIQTRTNEKAELQELNDRFAN 105 Query 117 YIDKV 121 ||+|| Sbjct 106 YIEKV 110 |
| Sus scrofa | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +| | |+ || | | +|||||||#+| || ||||||||||||||||||||+|| Sbjct 63 SRLGATRVPSSSYGAGEL---LDFSLADA#VNQEFLTTRTNEKVELQELNDRFANYIEKV 118 |
| Cricetulus griseus | Query 87 SLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||# ||||||||||||||||||||||||||||| Sbjct 1 SLADA#CNTEFKNTRTNEKVELQELNDRFANYIDKV 35 |
| Tetraodon nigroviridis | Query 69 RLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | ||| || | |||+||+|#+| || ||+||| ||||||||||++|+|| Sbjct 57 RSRSSAQAPRLSYDKVDFTLAEA#VNQEFLTTRSNEKAELQELNDRFASFIEKV 109 |
| Lampetra fluviatilis | Query 72 SSVPGVRLLQ-DSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 || |+ | +||||||||#+| +++ |||||||||||||||||+||||| Sbjct 75 SSASYVKALSGQNVDFSLADA#LNADYRTTRTNEKVELQELNDRFASYIDKV 125 |
| Canis lupus familiaris | Query 84 VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +|||||||#+| || ||||||||||||||||||||+|| Sbjct 88 LDFSLADA#VNQEFLTTRTNEKVELQELNDRFANYIEKV 125 |
| Mesocricetus auratus | Query 84 VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +|||||||#+| || ||||||||||||||||||||+|| Sbjct 88 LDFSLADA#VNQEFLATRTNEKVELQELNDRFANYIEKV 125 |
| Scyliorhinus stellaris | Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 + | | ||| ||+ + +|++||| ||#+|+||| |+||| |+ ||||| ||++||| Sbjct 49 IKRRSVRVNRSSAPGIAM-GNSLNFSLVDA#MNSEFKVNRSNEKAEMIELNDRLANFLDKV 107 |
| Takifugu rubripes | Query 82 DSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 + +||+||||#+| +| ||||||| ||| ||||||+||+|| Sbjct 61 EKLDFNLADA#MNQDFLNTRTNEKAELQHLNDRFASYIEKV 100 |
| Torpedo californica | Query 65 SSAVRL-RSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | +||| ||| | | ++||+| ||#+|+||| ||||| |+ ||||| ||++||| Sbjct 59 SRSVRLVRSSAPVVAS-SSNLDFTLVDA#MNSEFKVNRTNEKAEMIELNDRLANFLDKV 115 |
| Pongo pygmaeus | Query 75 PGVRL--------LQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 || || | |||||| |#+| || || +|+ |+ |||||||+||+|| Sbjct 33 PGTRLSLARMPPPLPTRVDFSLAGA#LNAGFKETRASERAEMMELNDRFASYIEKV 87 |
| Petromyzon marinus | Query 73 SVPGVRLLQDSVDF-SLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | | + ||+|| | + # + +||++| ||| ||+|||||| ||+|| Sbjct 69 STPALNSAADSLDFMSQSSV#FSGDFKHSRVNEKQLLQDLNDRFAGYIEKV 118 |
| Styela clava | Query 87 SLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +| |+#+ |||+ | ||| |||+|| ||| || || Sbjct 87 ALEDS#MGTEFQGQRINEKAELQQLNSRFAEYITKV 121 |
[Site 2] SSSPGGAYVT63-RSSAVRLRSS
Thr63 Arg
|
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Ser54 | Ser55 | Ser56 | Pro57 | Gly58 | Gly59 | Ala60 | Tyr61 | Val62 | Thr63 |
|
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Arg64 | Ser65 | Ser66 | Ala67 | Val68 | Arg69 | Leu70 | Arg71 | Ser72 | Ser73 |
Sequence conservation (by blast) Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| STRTYSLGSALRPSTSRSLYSSSPGGAYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAIN |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | Mus musculus | 84.00 | 14 | unnamed protein product |
| 2 | N/A | 84.00 | 9 | - |
| 3 | Rattus norvegicus | 82.80 | 1 | vimentin |
| 4 | Canis familiaris | 82.40 | 12 | PREDICTED: similar to vimentin isoform 1 |
| 5 | Homo sapiens | 80.90 | 7 | vimentin |
| 6 | Macaca fascicularis | 80.90 | 2 | VIME_MACFA Vimentin sp |
| 7 | Macaca mulatta | 80.90 | 1 | PREDICTED: vimentin |
| 8 | Pan troglodytes | 80.90 | 1 | vimentin |
| 9 | Pan troglodytes verus | 80.90 | 1 | vimentin |
| 10 | synthetic construct | 80.90 | 1 | vimentin |
| 11 | Bos taurus | 79.30 | 2 | vimentin |
| 12 | Ovis aries | 79.30 | 2 | vimentin |
| 13 | Monodelphis domestica | 67.00 | 1 | PREDICTED: similar to vimentin |
| 14 | Gallus gallus | 49.30 | 2 | vimentin |
| 15 | Xenopus laevis | 45.10 | 8 | Vim1 protein |
| 16 | Acipenser baerii | 45.10 | 1 | vimentin |
| 17 | Xenopus tropicalis | 40.40 | 3 | Unknown (protein for IMAGE:7605834) |
| 18 | Daboia russellii | 38.10 | 1 | AF447708_1 vimentin |
| 19 | Oncorhynchus mykiss | 37.70 | 1 | VIME_ONCMY Vimentin emb |
| 20 | Danio rerio | 35.00 | 4 | Plasticin protein |
| 21 | Cyprinus carpio | 32.30 | 1 | VIME_CYPCA Vimentin gb |
Top-ranked sequences
| organism | matching |
|---|---|
| Mus musculus | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| ||||||#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYSSSPGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
| N/A | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| ||||||#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYSSSPGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
| Rattus norvegicus | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| ||||||#||||||||||+||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYSSSPGGAYVT#RSSAVRLRSSMPGVRLLQDSVDFSLADAIN 93 |
| Canis familiaris | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| |||| |#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYASSPGGAYAT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
| Homo sapiens | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYASSPGGVYAT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
| Macaca fascicularis | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYASSPGGVYAT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
| Macaca mulatta | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYASSPGGVYAT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
| Pan troglodytes | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYASSPGGVYAT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
| Pan troglodytes verus | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYASSPGGVYAT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
| synthetic construct | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYASSPGGVYAT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
| Bos taurus | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#||||||||| |||||||||||||||||||| Sbjct 34 STRTYSLGSALRPTTSRTLYTSSPGGVYAT#RSSAVRLRSGVPGVRLLQDSVDFSLADAIN 93 |
| Ovis aries | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#||||||||| |||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRTLYTSSPGGVYAT#RSSAVRLRSGVPGVRLLQDSVDFSLADAIN 93 |
| Monodelphis domestica | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSS--VPGVRLLQDSVDFSLADA 91 || |||||| | | |#|||| ||||| +||||||||||||||||| Sbjct 33 STTRYSLGSAIRPSTTRSVYSSSPGAVYAT#RSSAARLRSSAPIPGVRLLQDSVDFSLADA 92 Query 92 IN 93 || Query 92 IN 93 |
| Gallus gallus | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |+ |||||| || | |#++++||||||+| +| + |+|||+|||||| Sbjct 10 SSTRYSLGSALRPSSARYVSASP-GGVYAT#KATSVRLRSSMPPMR-MHDAVDFTLADAIN 67 |
| Xenopus laevis | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |+ |+|||| | #+||+||||||+| |+ |||||+||||+| Sbjct 28 SSTRYTLGSAMRPSTSSRMVYSTSSSPAVF#KSSSVRLRSSLPPARMA-DSVDFALADAVN 86 |
| Acipenser baerii | Query 61 YVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 | |#+||+ ||||| | ||| +++||+|+|||| Sbjct 51 YAT#KSSSTRLRSSAPQTRLLSETLDFALSDAIN 83 |
| Xenopus tropicalis | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAY---VT#RSSAVRLRSSVPGVRLLQDSVDFSLAD 90 |+ |||||| + | #+||+||||||+| | | |+|||+||| Sbjct 51 SSTRYSLGSAMRPGAGSSSSRVVYSTSASPAVF#KSSSVRLRSSLPPAR-LADTVDFTLAD 109 Query 91 AIN 93 |+| Sbjct 110 AVN 112 |
| Daboia russellii | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDS-VDFSLADAI 92 || |||||+ || | # | |+|+||| | +| |+ ||||||||| Sbjct 32 STTRYSLGSSIRPSSVRLVSCP--GGIYA-#-SKAMRVRSSFPPMRTGGDAMVDFSLADAI 87 Query 93 N 93 | Query 93 N 93 |
| Oncorhynchus mykiss | Query 65 SSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 | |||||| | || |+|||+|+|||| Sbjct 61 SKNVRLRSSAPMPRLSSDTVDFALSDAIN 89 |
| Danio rerio | Query 58 GGAYVT----#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 || | + #| | ||| | || | ||||||+|+| Sbjct 24 GGRYTSSIPS#RPVDFRSRSSAPAPRLSYDKVDFSLAEAVN 63 |
| Cyprinus carpio | Query 65 SSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 | |+||| | || +++|| |||||| Sbjct 56 SKGARVRSSGPLPRLATETLDFGLADAIN 84 |
[Site 3] QIDVDVSKPD264-LTAALRDVRQ
Asp264 Leu
|
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Gln255 | Ile256 | Asp257 | Val258 | Asp259 | Val260 | Ser261 | Lys262 | Pro263 | Asp264 |
|
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Leu265 | Thr266 | Ala267 | Ala268 | Leu269 | Arg270 | Asp271 | Val272 | Arg273 | Gln274 |
Sequence conservation (by blast) Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| KKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSK |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | Mus musculus | 82.80 | 28 | unnamed protein product |
| 2 | N/A | 82.80 | 24 | - |
| 3 | Rattus norvegicus | 82.80 | 11 | vimentin |
| 4 | Cricetulus griseus | 82.80 | 1 | vimentin |
| 5 | Canis familiaris | 81.60 | 20 | PREDICTED: similar to vimentin isoform 1 |
| 6 | Bos taurus | 81.60 | 8 | vimentin |
| 7 | Monodelphis domestica | 81.60 | 6 | PREDICTED: similar to vimentin |
| 8 | Gallus gallus | 81.60 | 4 | vimentin |
| 9 | Bubalus bubalis | 81.60 | 1 | vimentin |
| 10 | Sus scrofa domestica | 81.60 | 1 | vimentin |
| 11 | Homo sapiens | 81.30 | 46 | VIM |
| 12 | Macaca mulatta | 81.30 | 10 | PREDICTED: vimentin |
| 13 | Pan troglodytes | 81.30 | 8 | vimentin |
| 14 | Macaca fascicularis | 81.30 | 4 | unnamed protein product |
| 15 | synthetic construct | 81.30 | 3 | vimentin |
| 16 | Pan troglodytes verus | 81.30 | 1 | vimentin |
| 17 | Ovis aries | 80.10 | 2 | vimentin |
| 18 | Xenopus laevis | 77.40 | 15 | vimentin 1 |
| 19 | Daboia russellii | 77.40 | 1 | AF447708_1 vimentin |
| 20 | Xenopus tropicalis | 76.30 | 5 | Unknown (protein for IMAGE:7605834) |
| 21 | Bos grunniens | 76.30 | 1 | vimentin |
| 22 | Cyprinus carpio | 72.00 | 2 | VIME_CYPCA Vimentin gb |
| 23 | Danio rerio | 70.90 | 17 | vimentin |
| 24 | Sus scrofa | 69.30 | 3 | desmin |
| 25 | Canis lupus familiaris | 69.30 | 1 | desmin |
| 26 | Mesocricetus auratus | 69.30 | 1 | DESM_MESAU Desmin gb |
| 27 | Scyliorhinus stellaris | 68.90 | 1 | desmin |
| 28 | Oncorhynchus mykiss | 68.60 | 2 | VIME_ONCMY Vimentin emb |
| 29 | Acipenser baerii | 68.20 | 2 | vimentin |
| 30 | Takifugu rubripes | 68.20 | 1 | TPA: desmin |
| 31 | Tetraodon nigroviridis | 67.40 | 7 | unnamed protein product |
| 32 | Protopterus aethiopicus | 66.20 | 1 | type III desmin |
| 33 | Oreochromis mossambicus | 65.50 | 1 | glial fibrillary acidic protein |
| 34 | Lampetra fluviatilis | 63.90 | 2 | intermediate filament protein |
| 35 | Pongo pygmaeus | 62.80 | 5 | hypothetical protein |
| 36 | Dama dama | 62.00 | 1 | glial fibrillary acidic protein |
| 37 | Equus caballus | 62.00 | 1 | glial fibrillary acidic protein |
| 38 | Capreolus capreolus | 62.00 | 1 | glial fibrillary acidic protein |
Top-ranked sequences
| organism | matching |
|---|---|
| Mus musculus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| N/A | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Rattus norvegicus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Cricetulus griseus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 149 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 |
| Canis familiaris | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQDQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Bos taurus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Monodelphis domestica | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||+|||#|||||||||||||||||||||||||||||| Sbjct 236 KKLHDEEIQELQAQIQEQHIQIDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 |
| Gallus gallus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 229 KKLHDEEIRELQAQLQEQHIQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 288 |
| Bubalus bubalis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 40 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 99 |
| Sus scrofa domestica | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 105 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 164 |
| Homo sapiens | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Macaca mulatta | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Pan troglodytes | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Macaca fascicularis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| synthetic construct | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Pan troglodytes verus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Ovis aries | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+|||+||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSQPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Xenopus laevis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||+|||||| +|||||||| Sbjct 229 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEEWYKSK 288 |
| Daboia russellii | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ |+||+|||#|||||||||||||||| ||||||||||||| Sbjct 230 KKLHEEEIRELQAQIQDQHIQIDMDVAKPD#LTAALRDVRQQYESVATKNLQEAEEWYKSK 289 |
| Xenopus tropicalis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||+|||||| +||+||||| Sbjct 254 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEDWYKSK 313 |
| Bos grunniens | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 291 ||||| |+||||||#||||||||||||||||||||||||||| Sbjct 48 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 104 |
| Cyprinus carpio | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |++|+|||#|||||+|||||||++|++||||+||||||| Sbjct 226 KKLHDEELAELQIQIQEQHVQIDMEVAKPD#LTAALKDVRQQYETLASRNLQESEEWYKSK 285 |
| Danio rerio | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |++|+|||#|||||+|||||||++|++||||+|+||||| Sbjct 226 KKLHDEELAEMQIQMQEQHLQIDMEVTKPD#LTAALKDVRQQYETLASRNLQESEDWYKSK 285 |
| Sus scrofa | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ ++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 232 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 291 |
| Canis lupus familiaris | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ ++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Mesocricetus auratus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ ++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Scyliorhinus stellaris | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ ++|+||||#|||||||+| ||| ++|||+|||||||||| Sbjct 224 KKVHEEELRELQAQLQEQHVQVEMDLSKPD#LTAALRDIRAQYECISAKNVQEAEEWYKSK 283 |
| Oncorhynchus mykiss | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|||| |+||+|||#||||||||| |||++|++|||++|+||||| Sbjct 231 RKLHDEEVAELQAQIQDQHVQIDMDVAKPD#LTAALRDVRVQYETLASRNLQDSEDWYKSK 290 |
| Acipenser baerii | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|||| |+||+|||#||||||||| |||++|+||+ |+|+||||| Sbjct 225 RKLHDEELAELQVQIQEQHIQIDMDVAKPD#LTAALRDVRLQYENLASKNMSESEDWYKSK 284 |
| Takifugu rubripes | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ +|+||||#|||||||+| ||| +||||+ ||||||||| Sbjct 215 KKIHEEEIRELQSQMQETQVQIQMDMSKPD#LTAALRDIRVQYEGIAAKNISEAEEWYKSK 274 |
| Tetraodon nigroviridis | Query 257 DVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |+||||||#|||||||+| ||||||+ |+|| ||||+|| Sbjct 69 DLDVSKPD#LTAALRDIRIQYESVASSNMQETEEWYRSK 106 |
| Protopterus aethiopicus | Query 257 DVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ++|+||||#|||||||+| ||||+||||+ +||||||+| Sbjct 246 EMDMSKPD#LTAALRDIRAQYESIAAKNIADAEEWYKTK 283 |
| Oreochromis mossambicus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKS 293 ||+|+ |+||||||#|||||||+| |||++|+ |+|| ||||+| Sbjct 121 KKIHEDELRELQEQIMAQQVHVDLDVSKPD#LTAALRDIRVQYENMASSNMQETEEWYRS 179 |
| Lampetra fluviatilis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 || || +|| |||#| ||||||| ||||+|+ |||||| |+||| Sbjct 132 KKAHDEEVRELQAMMQEQQVTVEVDTVKPD#LAAALRDVRAQYESIASSNLQEAETWFKSK 191 |
| Pongo pygmaeus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ ++||+|||#|+|||+|+| ||| +||||+| ||||+||+ Sbjct 224 KKVHEEEIAELQAQIQYAQISVEMDVTKPD#LSAALKDIRAQYEKLAAKNMQNAEEWFKSR 283 |
| Dama dama | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|+|+ ++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Equus caballus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|+|+ ++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVELDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Capreolus capreolus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|+|+ ++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
* References
[PubMed ID: 15632090] Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P, Sutton G, Gene and alternative splicing annotation with AIR. Genome Res. 2005 Jan;15(1):54-66.