XSB2610 : vimentin, isoform CRA_a [Mus musculus]
[ CaMP Format ]
This entry is computationally expanded from SB0037
* Basic Information
Organism | Mus musculus (house mouse) |
Protein Names | vimentin; isoform CRA_a |
Gene Names | Vim |
Gene Locus | Not available |
GO Function | Not available |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 405 aa
Average Mass: 46.477 kDa
Monoisotopic Mass: 46.448 kDa
2. Domain Information
Annotated Domains: Not Available.
Computationally Assigned Domains (Pfam+HMMER):
domain name | begin | end | score | e-value |
---|---|---|---|---|
Filament_head 1. | 6 | 101 | 110.6 | 5.4e-30 |
--- cleavage 91 (inside Filament_head 6..101) --- | ||||
--- cleavage 63 (inside Filament_head 6..101) --- | ||||
Filament 1. | 102 | 389 | 392.8 | 5.8e-115 |
--- cleavage 264 (inside Filament 102..389) --- |
3. Sequence Information
Fasta Sequence: XSB2610.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
3 [sites]
Cleavage sites (±10aa)
[Site 1] DSVDFSLADA91-INTEFKNTRT
Ala91 Ile
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P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
---|---|---|---|---|---|---|---|---|---|
Asp82 | Ser83 | Val84 | Asp85 | Phe86 | Ser87 | Leu88 | Ala89 | Asp90 | Ala91 |
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P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
Ile92 | Asn93 | Thr94 | Glu95 | Phe96 | Lys97 | Asn98 | Thr99 | Arg100 | Thr101 |
Sequence conservation (by blast)
Sequence conservation (by blast)
Reference peptide (cleaved bond±30 residues) |
---|
VTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKV |
Summary
# | organism | max score | hits | top seq |
---|---|---|---|---|
1 | Mus musculus | 117.00 | 30 | unnamed protein product |
2 | N/A | 117.00 | 25 | - |
3 | Rattus norvegicus | 116.00 | 10 | vimentin |
4 | Homo sapiens | 115.00 | 36 | unnamed protein product |
5 | Canis familiaris | 115.00 | 18 | PREDICTED: similar to Vimentin isoform 2 |
6 | Macaca mulatta | 115.00 | 7 | PREDICTED: vimentin |
7 | Macaca fascicularis | 115.00 | 6 | VIME_MACFA Vimentin sp |
8 | Pan troglodytes | 115.00 | 6 | vimentin |
9 | synthetic construct | 115.00 | 2 | vimentin |
10 | Pan troglodytes verus | 115.00 | 1 | vimentin |
11 | Bos taurus | 114.00 | 11 | vimentin |
12 | Ovis aries | 114.00 | 2 | vimentin |
13 | Monodelphis domestica | 108.00 | 6 | PREDICTED: similar to vimentin |
14 | Gallus gallus | 89.70 | 5 | vimentin |
15 | Acipenser baerii | 86.70 | 2 | vimentin |
16 | Xenopus tropicalis | 83.20 | 8 | Unknown (protein for IMAGE:7605834) |
17 | Xenopus laevis | 82.80 | 21 | Vim1 protein |
18 | Daboia russellii | 82.00 | 1 | AF447708_1 vimentin |
19 | Oncorhynchus mykiss | 80.50 | 2 | VIME_ONCMY Vimentin emb |
20 | Cyprinus carpio | 77.40 | 1 | VIME_CYPCA Vimentin gb |
21 | Danio rerio | 77.00 | 24 | vimentin |
22 | Protopterus aethiopicus | 75.50 | 2 | type III desmin |
23 | Sus scrofa | 70.50 | 3 | desmin |
24 | Cricetulus griseus | 70.50 | 1 | vimentin |
25 | Tetraodon nigroviridis | 69.70 | 7 | unnamed protein product |
26 | Lampetra fluviatilis | 68.90 | 1 | intermediate filament protein type III |
27 | Canis lupus familiaris | 68.20 | 1 | desmin |
28 | Mesocricetus auratus | 67.40 | 1 | DESM_MESAU Desmin gb |
29 | Scyliorhinus stellaris | 62.80 | 2 | vimentin |
30 | Takifugu rubripes | 62.80 | 1 | TPA: desmin |
31 | Torpedo californica | 61.20 | 1 | IF3T_TORCA Type III intermediate filament emb |
32 | Pongo pygmaeus | 57.00 | 1 | hypothetical protein |
33 | Petromyzon marinus | 49.30 | 3 | neurofilament subunit NF-95 |
34 | Styela clava | 46.20 | 1 | intermediate filament protein A |
Top-ranked sequences
organism | matching |
---|---|
Mus musculus | Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
N/A | Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
Rattus norvegicus | Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||||||||||+|||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 62 VTRSSAVRLRSSMPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
Homo sapiens | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
Canis familiaris | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
Macaca mulatta | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
Macaca fascicularis | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
Pan troglodytes | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
synthetic construct | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
Pan troglodytes verus | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
Bos taurus | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 63 TRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
Ovis aries | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||||||| ||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 63 TRSSAVRLRSGVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |
Monodelphis domestica | Query 63 TRSSAVRLRSS--VPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDK 120 ||||| ||||| +|||||||||||||||||#||||||||||||||||||||||||||||| Sbjct 62 TRSSAARLRSSAPIPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDK 121 Query 121 V 121 | Query 121 V 121 |
Gallus gallus | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |++++||||||+| +|+ |+|||+||||#|||||| |||||||||||||||||||||| Sbjct 58 TKATSVRLRSSMPPMRM-HDAVDFTLADA#INTEFKANRTNEKVELQELNDRFANYIDKV 115 |
Acipenser baerii | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |+||+ ||||| | ||| +++||+|+||#|||||| ||||| |+| ||||||+||||| Sbjct 53 TKSSSTRLRSSAPQTRLLSETLDFALSDA#INTEFKANRTNEKAEMQHLNDRFASYIDKV 111 |
Xenopus tropicalis | Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | +||+||||||+| || |+|||+||||#+| |+| ||||| |+|||||||||+|||| Sbjct 82 VFKSSSVRLRSSLPPARLA-DTVDFTLADA#VNLEYKANRTNEKAEMQELNDRFANFIDKV 140 |
Xenopus laevis | Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | +||+||||||+| |+ |||||+||||#+| ||| ||||| |+ ||||||||+|||| Sbjct 56 VFKSSSVRLRSSLPPARMA-DSVDFALADA#VNLEFKANRTNEKAEMMELNDRFANFIDKV 114 |
Daboia russellii | Query 65 SSAVRLRSSVPGVRLLQDS-VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | |+|+||| | +| |+ ||||||||#|||||| ||||| |||||||||||||||| Sbjct 59 SKAMRVRSSFPPMRTGGDAMVDFSLADA#INTEFKANRTNEKAELQELNDRFANYIDKV 116 |
Oncorhynchus mykiss | Query 65 SSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | |||||| | || |+|||+|+||#||+||| ||||| |+| ||||||+||||| Sbjct 61 SKNVRLRSSAPMPRLSSDTVDFALSDA#INSEFKANRTNEKAEMQHLNDRFASYIDKV 117 |
Cyprinus carpio | Query 65 SSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | |+||| | || +++|| ||||#|||||| ||||| |+| ||||||+||||| Sbjct 56 SKGARVRSSGPLPRLATETLDFGLADA#INTEFKTNRTNEKAEMQHLNDRFASYIDKV 112 |
Danio rerio | Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | | +|+|| | || |++|| ||+|#|||||| ||||| |+| ||||||+||||| Sbjct 53 VYASKGLRVRSGAPLPRLATDTLDFGLAEA#INTEFKANRTNEKAEMQHLNDRFASYIDKV 112 |
Protopterus aethiopicus | Query 62 VTRSSAVRLRSS-----VPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFAN 116 |+||||| || +| + +|+|||||||#+| || |||||| ||||||||||| Sbjct 46 VSRSSAVPSYSSFRATRIPAAKTALESMDFSLADA#MNQEFIQTRTNEKAELQELNDRFAN 105 Query 117 YIDKV 121 ||+|| Sbjct 106 YIEKV 110 |
Sus scrofa | Query 63 TRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +| | |+ || | | +|||||||#+| || ||||||||||||||||||||+|| Sbjct 63 SRLGATRVPSSSYGAGEL---LDFSLADA#VNQEFLTTRTNEKVELQELNDRFANYIEKV 118 |
Cricetulus griseus | Query 87 SLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 |||||# ||||||||||||||||||||||||||||| Sbjct 1 SLADA#CNTEFKNTRTNEKVELQELNDRFANYIDKV 35 |
Tetraodon nigroviridis | Query 69 RLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 ||||| || +++||||+||#||||| ||||| ++| ||||||+||+|| Sbjct 48 RLRSSSAMPRLASENLDFSLSDA#INTEFITNRTNEKAQMQSLNDRFASYIEKV 100 |
Lampetra fluviatilis | Query 72 SSVPGVRLLQ-DSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 || |+ | +||||||||#+| +++ |||||||||||||||||+||||| Sbjct 75 SSASYVKALSGQNVDFSLADA#LNADYRTTRTNEKVELQELNDRFASYIDKV 125 |
Canis lupus familiaris | Query 84 VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +|||||||#+| || ||||||||||||||||||||+|| Sbjct 88 LDFSLADA#VNQEFLTTRTNEKVELQELNDRFANYIEKV 125 |
Mesocricetus auratus | Query 84 VDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +|||||||#+| || ||||||||||||||||||||+|| Sbjct 88 LDFSLADA#VNQEFLATRTNEKVELQELNDRFANYIEKV 125 |
Scyliorhinus stellaris | Query 62 VTRSSAVRLRSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 + | | ||| ||+ + +|++||| ||#+|+||| |+||| |+ ||||| ||++||| Sbjct 49 IKRRSVRVNRSSAPGIAM-GNSLNFSLVDA#MNSEFKVNRSNEKAEMIELNDRLANFLDKV 107 |
Takifugu rubripes | Query 82 DSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 + +||+||||#+| +| ||||||| ||| ||||||+||+|| Sbjct 61 EKLDFNLADA#MNQDFLNTRTNEKAELQHLNDRFASYIEKV 100 |
Torpedo californica | Query 65 SSAVRL-RSSVPGVRLLQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | +||| ||| | | ++||+| ||#+|+||| ||||| |+ ||||| ||++||| Sbjct 59 SRSVRLVRSSAPVVAS-SSNLDFTLVDA#MNSEFKVNRTNEKAEMIELNDRLANFLDKV 115 |
Pongo pygmaeus | Query 75 PGVRL--------LQDSVDFSLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 || || | |||||| |#+| || || +|+ |+ |||||||+||+|| Sbjct 33 PGTRLSLARMPPPLPTRVDFSLAGA#LNAGFKETRASERAEMMELNDRFASYIEKV 87 |
Petromyzon marinus | Query 73 SVPGVRLLQDSVDF-SLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 | | + ||+|| | + # + +||++| ||| ||+|||||| ||+|| Sbjct 69 STPALNSAADSLDFMSQSSV#FSGDFKHSRVNEKQLLQDLNDRFAGYIEKV 118 |
Styela clava | Query 87 SLADA#INTEFKNTRTNEKVELQELNDRFANYIDKV 121 +| |+#+ |||+ | ||| |||+|| ||| || || Sbjct 87 ALEDS#MGTEFQGQRINEKAELQQLNSRFAEYITKV 121 |
[Site 2] SSSPGGAYVT63-RSSAVRLRSS
Thr63 Arg
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P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
---|---|---|---|---|---|---|---|---|---|
Ser54 | Ser55 | Ser56 | Pro57 | Gly58 | Gly59 | Ala60 | Tyr61 | Val62 | Thr63 |
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P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
Arg64 | Ser65 | Ser66 | Ala67 | Val68 | Arg69 | Leu70 | Arg71 | Ser72 | Ser73 |
Sequence conservation (by blast)
Sequence conservation (by blast)
Reference peptide (cleaved bond±30 residues) |
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STRTYSLGSALRPSTSRSLYSSSPGGAYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAIN |
Summary
# | organism | max score | hits | top seq |
---|---|---|---|---|
1 | Mus musculus | 84.00 | 14 | vimentin |
2 | N/A | 84.00 | 9 | - |
3 | Rattus norvegicus | 82.80 | 1 | vimentin |
4 | Canis familiaris | 82.40 | 12 | PREDICTED: similar to Vimentin isoform 2 |
5 | Homo sapiens | 80.90 | 7 | vimentin |
6 | Macaca fascicularis | 80.90 | 2 | VIME_MACFA Vimentin sp |
7 | Macaca mulatta | 80.90 | 1 | PREDICTED: vimentin |
8 | Pan troglodytes | 80.90 | 1 | vimentin |
9 | Pan troglodytes verus | 80.90 | 1 | vimentin |
10 | synthetic construct | 80.90 | 1 | vimentin |
11 | Bos taurus | 79.30 | 2 | vimentin |
12 | Ovis aries | 79.30 | 2 | vimentin |
13 | Monodelphis domestica | 67.00 | 1 | PREDICTED: similar to vimentin |
14 | Gallus gallus | 49.30 | 2 | vimentin |
15 | Xenopus laevis | 45.10 | 8 | VIM1_XENLA Vimentin-1/2 emb |
16 | Acipenser baerii | 45.10 | 1 | vimentin |
17 | Xenopus tropicalis | 40.40 | 3 | Unknown (protein for IMAGE:7605834) |
18 | Daboia russellii | 38.10 | 1 | AF447708_1 vimentin |
19 | Oncorhynchus mykiss | 37.70 | 1 | VIME_ONCMY Vimentin emb |
20 | Danio rerio | 35.00 | 4 | plasticin |
21 | Cyprinus carpio | 32.30 | 1 | VIME_CYPCA Vimentin gb |
Top-ranked sequences
organism | matching |
---|---|
Mus musculus | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| ||||||#|||||||||||||||||||||||||||||| Sbjct 14 STRTYSLGSALRPSTSRSLYSSSPGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 73 |
N/A | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| ||||||#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYSSSPGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
Rattus norvegicus | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| ||||||#||||||||||+||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYSSSPGGAYVT#RSSAVRLRSSMPGVRLLQDSVDFSLADAIN 93 |
Canis familiaris | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| |||| |#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYASSPGGAYAT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
Homo sapiens | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYASSPGGVYAT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
Macaca fascicularis | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYASSPGGVYAT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
Macaca mulatta | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYASSPGGVYAT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
Pan troglodytes | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYASSPGGVYAT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
Pan troglodytes verus | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYASSPGGVYAT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
synthetic construct | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#|||||||||||||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRSLYASSPGGVYAT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |
Bos taurus | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#||||||||| |||||||||||||||||||| Sbjct 34 STRTYSLGSALRPTTSRTLYTSSPGGVYAT#RSSAVRLRSGVPGVRLLQDSVDFSLADAIN 93 |
Ovis aries | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |||||||||| || | |#||||||||| |||||||||||||||||||| Sbjct 34 STRTYSLGSALRPSTSRTLYTSSPGGVYAT#RSSAVRLRSGVPGVRLLQDSVDFSLADAIN 93 |
Monodelphis domestica | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSS--VPGVRLLQDSVDFSLADA 91 || |||||| | | |#|||| ||||| +||||||||||||||||| Sbjct 33 STTRYSLGSAIRPSTTRSVYSSSPGAVYAT#RSSAARLRSSAPIPGVRLLQDSVDFSLADA 92 Query 92 IN 93 || Query 92 IN 93 |
Gallus gallus | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |+ |||||| || | |#++++||||||+| +| + |+|||+|||||| Sbjct 10 SSTRYSLGSALRPSSARYVSASP-GGVYAT#KATSVRLRSSMPPMR-MHDAVDFTLADAIN 67 |
Xenopus laevis | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 |+ |+|||| | #+||+||||||+| |+ |||||+||||+| Sbjct 28 SSTRYTLGSAMRPSTSSRMVYSTSSSPAVF#KSSSVRLRSSLPPARMA-DSVDFALADAVN 86 |
Acipenser baerii | Query 61 YVT#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 | |#+||+ ||||| | ||| +++||+|+|||| Sbjct 51 YAT#KSSSTRLRSSAPQTRLLSETLDFALSDAIN 83 |
Xenopus tropicalis | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAY---VT#RSSAVRLRSSVPGVRLLQDSVDFSLAD 90 |+ |||||| + | #+||+||||||+| | | |+|||+||| Sbjct 51 SSTRYSLGSAMRPGAGSSSSRVVYSTSASPAVF#KSSSVRLRSSLPPAR-LADTVDFTLAD 109 Query 91 AIN 93 |+| Sbjct 110 AVN 112 |
Daboia russellii | Query 34 STRTYSLGSAXXXXXXXXXXXXXXGGAYVT#RSSAVRLRSSVPGVRLLQDS-VDFSLADAI 92 || |||||+ || | # | |+|+||| | +| |+ ||||||||| Sbjct 32 STTRYSLGSSIRPSSVRLVSCP--GGIYA-#-SKAMRVRSSFPPMRTGGDAMVDFSLADAI 87 Query 93 N 93 | Query 93 N 93 |
Oncorhynchus mykiss | Query 65 SSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 | |||||| | || |+|||+|+|||| Sbjct 61 SKNVRLRSSAPMPRLSSDTVDFALSDAIN 89 |
Danio rerio | Query 58 GGAYVT----#RSSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 || | + #| | ||| | || | ||||||+|+| Sbjct 24 GGRYTSSIPS#RPVDFRSRSSAPAPRLSYDKVDFSLAEAVN 63 |
Cyprinus carpio | Query 65 SSAVRLRSSVPGVRLLQDSVDFSLADAIN 93 | |+||| | || +++|| |||||| Sbjct 56 SKGARVRSSGPLPRLATETLDFGLADAIN 84 |
[Site 3] QIDVDVSKPD264-LTAALRDVRQ
Asp264 Leu
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P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
---|---|---|---|---|---|---|---|---|---|
Gln255 | Ile256 | Asp257 | Val258 | Asp259 | Val260 | Ser261 | Lys262 | Pro263 | Asp264 |
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P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
Leu265 | Thr266 | Ala267 | Ala268 | Leu269 | Arg270 | Asp271 | Val272 | Arg273 | Gln274 |
Sequence conservation (by blast)
Sequence conservation (by blast)
Reference peptide (cleaved bond±30 residues) |
---|
KKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSK |
Summary
# | organism | max score | hits | top seq |
---|---|---|---|---|
1 | Mus musculus | 82.80 | 28 | unnamed protein product |
2 | N/A | 82.80 | 24 | V |
3 | Rattus norvegicus | 82.80 | 11 | vimentin |
4 | Cricetulus griseus | 82.80 | 1 | vimentin |
5 | Canis familiaris | 81.60 | 20 | PREDICTED: similar to Vimentin isoform 2 |
6 | Bos taurus | 81.60 | 8 | vimentin |
7 | Monodelphis domestica | 81.60 | 6 | PREDICTED: similar to vimentin |
8 | Gallus gallus | 81.60 | 4 | vimentin |
9 | Bubalus bubalis | 81.60 | 1 | vimentin |
10 | Sus scrofa domestica | 81.60 | 1 | vimentin |
11 | Homo sapiens | 81.30 | 46 | unnamed protein product |
12 | Macaca mulatta | 81.30 | 10 | PREDICTED: vimentin |
13 | Pan troglodytes | 81.30 | 8 | vimentin |
14 | Macaca fascicularis | 81.30 | 4 | unnamed protein product |
15 | synthetic construct | 81.30 | 3 | vimentin |
16 | Pan troglodytes verus | 81.30 | 1 | vimentin |
17 | Ovis aries | 80.10 | 2 | vimentin |
18 | Xenopus laevis | 77.40 | 15 | VIM1_XENLA Vimentin-1/2 emb |
19 | Daboia russellii | 77.40 | 1 | AF447708_1 vimentin |
20 | Xenopus tropicalis | 76.30 | 5 | Unknown (protein for IMAGE:7605834) |
21 | Bos grunniens | 76.30 | 1 | vimentin |
22 | Cyprinus carpio | 72.00 | 2 | VIME_CYPCA Vimentin gb |
23 | Danio rerio | 70.90 | 17 | vimentin |
24 | Sus scrofa | 69.30 | 3 | desmin |
25 | Canis lupus familiaris | 69.30 | 1 | desmin |
26 | Mesocricetus auratus | 69.30 | 1 | DESM_MESAU Desmin gb |
27 | Scyliorhinus stellaris | 68.90 | 1 | desmin |
28 | Oncorhynchus mykiss | 68.60 | 2 | VIME_ONCMY Vimentin emb |
29 | Acipenser baerii | 68.20 | 2 | vimentin |
30 | Takifugu rubripes | 68.20 | 1 | TPA: desmin |
31 | Tetraodon nigroviridis | 67.40 | 7 | unnamed protein product |
32 | Protopterus aethiopicus | 66.20 | 1 | type III desmin |
33 | Oreochromis mossambicus | 65.50 | 1 | glial fibrillary acidic protein |
34 | Lampetra fluviatilis | 63.90 | 2 | intermediate filament protein |
35 | Pongo pygmaeus | 62.80 | 5 | hypothetical protein |
36 | Dama dama | 62.00 | 1 | glial fibrillary acidic protein |
37 | Equus caballus | 62.00 | 1 | glial fibrillary acidic protein |
38 | Capreolus capreolus | 62.00 | 1 | glial fibrillary acidic protein |
Top-ranked sequences
organism | matching |
---|---|
Mus musculus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 174 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 |
N/A | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 217 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 276 |
Rattus norvegicus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
Cricetulus griseus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||||||#|||||||||||||||||||||||||||||| Sbjct 149 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 |
Canis familiaris | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 229 KKLHDEEIQELQAQIQDQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 288 |
Bos taurus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
Monodelphis domestica | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| ||||+|||#|||||||||||||||||||||||||||||| Sbjct 236 KKLHDEEIQELQAQIQEQHIQIDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 |
Gallus gallus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 229 KKLHDEEIRELQAQLQEQHIQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 288 |
Bubalus bubalis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 40 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 99 |
Sus scrofa domestica | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||||||||||||||||||| Sbjct 105 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 164 |
Homo sapiens | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 214 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 273 |
Macaca mulatta | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
Pan troglodytes | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
Macaca fascicularis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
synthetic construct | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
Pan troglodytes verus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ ||||||||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
Ovis aries | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+|||+||#|||||||||||||||||||||||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSQPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
Xenopus laevis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||+|||||| +|||||||| Sbjct 228 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEEWYKSK 287 |
Daboia russellii | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||+ |+||+|||#|||||||||||||||| ||||||||||||| Sbjct 230 KKLHEEEIRELQAQIQDQHIQIDMDVAKPD#LTAALRDVRQQYESVATKNLQEAEEWYKSK 289 |
Xenopus tropicalis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |+||||||#|||||||||||||+|||||| +||+||||| Sbjct 254 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEDWYKSK 313 |
Bos grunniens | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 291 ||||| |+||||||#||||||||||||||||||||||||||| Sbjct 48 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 104 |
Cyprinus carpio | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |++|+|||#|||||+|||||||++|++||||+||||||| Sbjct 226 KKLHDEELAELQIQIQEQHVQIDMEVAKPD#LTAALKDVRQQYETLASRNLQESEEWYKSK 285 |
Danio rerio | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||||| |++|+|||#|||||+|||||||++|++||||+|+||||| Sbjct 226 KKLHDEELAEMQIQMQEQHLQIDMEVTKPD#LTAALKDVRQQYETLASRNLQESEDWYKSK 285 |
Sus scrofa | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ ++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 232 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 291 |
Canis lupus familiaris | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ ++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
Mesocricetus auratus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ ++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
Scyliorhinus stellaris | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ ++|+||||#|||||||+| ||| ++|||+|||||||||| Sbjct 224 KKVHEEELRELQAQLQEQHVQVEMDLSKPD#LTAALRDIRAQYECISAKNVQEAEEWYKSK 283 |
Oncorhynchus mykiss | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|||| |+||+|||#||||||||| |||++|++|||++|+||||| Sbjct 231 RKLHDEEVAELQAQIQDQHVQIDMDVAKPD#LTAALRDVRVQYETLASRNLQDSEDWYKSK 290 |
Acipenser baerii | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|||| |+||+|||#||||||||| |||++|+||+ |+|+||||| Sbjct 225 RKLHDEELAELQVQIQEQHIQIDMDVAKPD#LTAALRDVRLQYENLASKNMSESEDWYKSK 284 |
Takifugu rubripes | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ +|+||||#|||||||+| ||| +||||+ ||||||||| Sbjct 215 KKIHEEEIRELQSQMQETQVQIQMDMSKPD#LTAALRDIRVQYEGIAAKNISEAEEWYKSK 274 |
Tetraodon nigroviridis | Query 257 DVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |+||||||#|||||||+| ||||||+ |+|| ||||+|| Sbjct 69 DLDVSKPD#LTAALRDIRIQYESVASSNMQETEEWYRSK 106 |
Protopterus aethiopicus | Query 257 DVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ++|+||||#|||||||+| ||||+||||+ +||||||+| Sbjct 246 EMDMSKPD#LTAALRDIRAQYESIAAKNIADAEEWYKTK 283 |
Oreochromis mossambicus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKS 293 ||+|+ |+||||||#|||||||+| |||++|+ |+|| ||||+| Sbjct 121 KKIHEDELRELQEQIMAQQVHVDLDVSKPD#LTAALRDIRVQYENMASSNMQETEEWYRS 179 |
Lampetra fluviatilis | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 || || +|| |||#| ||||||| ||||+|+ |||||| |+||| Sbjct 132 KKAHDEEVRELQAMMQEQQVTVEVDTVKPD#LAAALRDVRAQYESIASSNLQEAETWFKSK 191 |
Pongo pygmaeus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 ||+|+ ++||+|||#|+|||+|+| ||| +||||+| ||||+||+ Sbjct 224 KKVHEEEIAELQAQIQYAQISVEMDVTKPD#LSAALKDIRAQYEKLAAKNMQNAEEWFKSR 283 |
Dama dama | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|+|+ ++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
Equus caballus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|+|+ ++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVELDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
Capreolus capreolus | Query 235 KKLHDXXXXXXXXXXXXXXXXXDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 +|+|+ ++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
* References
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