logo CaMPDB: Calpain for Modulatory Proteolysis Database

XSB2610 : vimentin, isoform CRA_a [Mus musculus]

[ CaMP Format ]

This entry is computationally expanded from SB0037

* Basic Information

OrganismMus musculus (house mouse)
Protein Namesvimentin; isoform CRA_a
Gene NamesVim
Gene LocusNot available
GO FunctionNot available
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
EDL08053 N/A 22352 N/A N/A N/A N/A N/A

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 405 aa

Average Mass: 46.477 kDa

Monoisotopic Mass: 46.448 kDa

2. Domain Information

Annotated Domains: Not Available.

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
Filament_head 1. 6101110.65.4e-30
--- cleavage 91 (inside Filament_head 6..101) ---
--- cleavage 63 (inside Filament_head 6..101) ---
Filament 1. 102389392.85.8e-115
--- cleavage 264 (inside Filament 102..389) ---

3. Sequence Information

Fasta Sequence: XSB2610.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Not Available.

* Cleavage Information

3 [sites]

Cleavage sites (±10aa)

[Site 1] DSVDFSLADA91-INTEFKNTRT

Ala91 Ile

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Asp82Ser83Val84Asp85Phe86Ser87Leu88Ala89Asp90Ala91
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Ile92Asn93Thr94Glu95Phe96Lys97Asn98Thr99Arg100Thr101

Sequence conservation (by blast)

[Site 2] SSSPGGAYVT63-RSSAVRLRSS

Thr63 Arg

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Ser54Ser55Ser56Pro57Gly58Gly59Ala60Tyr61Val62Thr63
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Arg64Ser65Ser66Ala67Val68Arg69Leu70Arg71Ser72Ser73

Sequence conservation (by blast)

[Site 3] QIDVDVSKPD264-LTAALRDVRQ

Asp264 Leu

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Gln255Ile256Asp257Val258Asp259Val260Ser261Lys262Pro263Asp264
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Leu265Thr266Ala267Ala268Leu269Arg270Asp271Val272Arg273Gln274

Sequence conservation (by blast)

* References

[PubMed ID: 12040188] Mural RJ, Adams MD, Myers EW, Smith HO, Miklos GL, Wides R, Halpern A, Li PW, Sutton GG, Nadeau J, Salzberg SL, Holt RA, Kodira CD, Lu F, Chen L, Deng Z, Evangelista CC, Gan W, Heiman TJ, Li J, Li Z, Merkulov GV, Milshina NV, Naik AK, Qi R, Shue BC, Wang A, Wang J, Wang X, Yan X, Ye J, Yooseph S, Zhao Q, Zheng L, Zhu SC, Biddick K, Bolanos R, Delcher AL, Dew IM, Fasulo D, Flanigan MJ, Huson DH, Kravitz SA, Miller JR, Mobarry CM, Reinert K, Remington KA, Zhang Q, Zheng XH, Nusskern DR, Lai Z, Lei Y, Zhong W, Yao A, Guan P, Ji RR, Gu Z, Wang ZY, Zhong F, Xiao C, Chiang CC, Yandell M, Wortman JR, Amanatides PG, Hladun SL, Pratts EC, Johnson JE, Dodson KL, Woodford KJ, Evans CA, Gropman B, Rusch DB, Venter E, Wang M, Smith TJ, Houck JT, Tompkins DE, Haynes C, Jacob D, Chin SH, Allen DR, Dahlke CE, Sanders R, Li K, Liu X, Levitsky AA, Majoros WH, Chen Q, Xia AC, Lopez JR, Donnelly MT, Newman MH, Glodek A, Kraft CL, Nodell M, Ali F, An HJ, Baldwin-Pitts D, Beeson KY, Cai S, Carnes M, Carver A, Caulk PM, Center A, Chen YH, Cheng ML, Coyne MD, Crowder M, Danaher S, Davenport LB, Desilets R, Dietz SM, Doup L, Dullaghan P, Ferriera S, Fosler CR, Gire HC, Gluecksmann A, Gocayne JD, Gray J, Hart B, Haynes J, Hoover J, Howland T, Ibegwam C, Jalali M, Johns D, Kline L, Ma DS, MacCawley S, Magoon A, Mann F, May D, McIntosh TC, Mehta S, Moy L, Moy MC, Murphy BJ, Murphy SD, Nelson KA, Nuri Z, Parker KA, Prudhomme AC, Puri VN, Qureshi H, Raley JC, Reardon MS, Regier MA, Rogers YH, Romblad DL, Schutz J, Scott JL, Scott R, Sitter CD, Smallwood M, Sprague AC, Stewart E, Strong RV, Suh E, Sylvester K, Thomas R, Tint NN, Tsonis C, Wang G, Wang G, Williams MS, Williams SM, Windsor SM, Wolfe K, Wu MM, Zaveri J, Chaturvedi K, Gabrielian AE, Ke Z, Sun J, Subramanian G, Venter JC, Pfannkoch CM, Barnstead M, Stephenson LD, A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science. 2002 May 31;296(5573):1661-71.