logo CaMPDB: Calpain for Modulatory Proteolysis Database

XSB2613 : RecName: Full=Vimentin

[ CaMP Format ]

This entry is computationally expanded from SB0037

* Basic Information

OrganismPan troglodytes (chimpanzee)
Protein NamesVimentin
Gene NamesVIM
Gene LocusNot available
GO FunctionNot available
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
Q5R1W8 N/A N/A VIME_PANTR N/A N/A N/A ptr:493952

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 466 aa

Average Mass: 53.653 kDa

Monoisotopic Mass: 53.620 kDa

2. Domain Information

Annotated Domains: interpro / pfam / smart / prosite

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
Filament_head 1. 6101125.41.8e-34
--- cleavage 91 (inside Filament_head 6..101) ---
--- cleavage 63 (inside Filament_head 6..101) ---
Filament 1. 102410612.73.8e-181
--- cleavage 264 (inside Filament 102..410) ---

3. Sequence Information

Fasta Sequence: XSB2613.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Not Available.

* Cleavage Information

3 [sites]

Cleavage sites (±10aa)

[Site 1] DSVDFSLADA91-INTEFKNTRT

Ala91 Ile

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Asp82Ser83Val84Asp85Phe86Ser87Leu88Ala89Asp90Ala91
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Ile92Asn93Thr94Glu95Phe96Lys97Asn98Thr99Arg100Thr101

Sequence conservation (by blast)

[Site 2] ASSPGGVYAT63-RSSAVRLRSS

Thr63 Arg

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Ala54Ser55Ser56Pro57Gly58Gly59Val60Tyr61Ala62Thr63
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Arg64Ser65Ser66Ala67Val68Arg69Leu70Arg71Ser72Ser73

Sequence conservation (by blast)

[Site 3] QIDVDVSKPD264-LTAALRDVRQ

Asp264 Leu

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
Gln255Ile256Asp257Val258Asp259Val260Ser261Lys262Pro263Asp264
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'
Leu265Thr266Ala267Ala268Leu269Arg270Asp271Val272Arg273Gln274

Sequence conservation (by blast)

* References

[PubMed ID: 17574350] Sakate R, Suto Y, Imanishi T, Tanoue T, Hida M, Hayasaka I, Kusuda J, Gojobori T, Hashimoto K, Hirai M, Mapping of chimpanzee full-length cDNAs onto the human genome unveils large potential divergence of the transcriptome. Gene. 2007 Sep 1;399(1):1-10. Epub 2007 Apr 20.