XSB2951 : coatomer protein complex, subunit beta 1, isoform CRA_b [Rattus norvegicus]
[ CaMP Format ]
This entry is computationally expanded from SB0044
* Basic Information
| Organism | Rattus norvegicus (Norway rat) |
| Protein Names | coatomer protein complex; subunit beta 1; isoform CRA_b |
| Gene Names | Copb1 |
| Gene Locus | Not available |
| GO Function | Not available |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 947 aa
Average Mass: 106.201 kDa
Monoisotopic Mass: 106.133 kDa
2. Domain Information
Annotated Domains: Not Available.
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
|---|---|---|---|---|
| Adaptin_N 1. | 18 | 544 | 502.7 | 5e-148 |
| --- cleavage 522 (inside Adaptin_N 18..544) --- | ||||
| Coatamer_beta_C 1. | 659 | 941 | 563.1 | 3.2e-166 |
3. Sequence Information
Fasta Sequence: XSB2951.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
1 [sites]
Cleavage sites (±10aa)
[Site 1] GTYATQSALS522-SSRPTKKEED
Ser522 
Ser
 |
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Gly513 | Thr514 | Tyr515 | Ala516 | Thr517 | Gln518 | Ser519 | Ala520 | Leu521 | Ser522 |
 |
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Ser523 | Ser524 | Arg525 | Pro526 | Thr527 | Lys528 | Lys529 | Glu530 | Glu531 | Asp532 |
Sequence conservation (by blast)
Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| ELKPEEEITVGPVQKLVTEMGTYATQSALSSSRPTKKEEDRPPLRGFLLDGDFFVAASLA |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | Mus musculus | 120.00 | 3 | coatomer protein complex, subunit beta 1 |
| 2 | Pan troglodytes | 120.00 | 3 | PREDICTED: coatomer protein complex, subunit beta |
| 3 | Homo sapiens | 120.00 | 2 | beta-cop homolog |
| 4 | Pongo pygmaeus | 120.00 | 1 | hypothetical protein |
| 5 | Rattus norvegicus | 120.00 | 1 | coatomer protein complex, subunit beta 1 |
| 6 | Gallus gallus | 119.00 | 1 | coatomer protein complex, subunit beta |
| 7 | Bos taurus | 118.00 | 1 | hypothetical protein LOC535533 |
| 8 | Canis familiaris | 118.00 | 1 | PREDICTED: similar to coatomer protein complex, su |
| 9 | Monodelphis domestica | 115.00 | 1 | PREDICTED: hypothetical protein |
| 10 | Xenopus laevis | 111.00 | 2 | hypothetical protein LOC735158 |
| 11 | Danio rerio | 104.00 | 2 | coatomer protein complex, subunit beta 1 |
| 12 | Tetraodon nigroviridis | 103.00 | 1 | unnamed protein product |
| 13 | Strongylocentrotus purpuratus | 67.80 | 1 | PREDICTED: similar to MGC80934 protein, partial |
| 14 | Caenorhabditis elegans | 61.60 | 1 | Y25C1A.5 |
| 15 | Apis mellifera | 57.00 | 1 | PREDICTED: similar to coatomer protein complex, su |
| 16 | Anopheles gambiae str. PEST | 56.20 | 1 | ENSANGP00000016931 |
| 17 | Aedes aegypti | 55.10 | 1 | coatomer beta subunit |
| 18 | Drosophila melanogaster | 54.70 | 1 | beta-coatomer protein CG6223-PA |
| 19 | N/A | 53.90 | 4 | - |
| 20 | Drosophila pseudoobscura | 53.50 | 1 | GA19453-PA |
| 21 | Caenorhabditis briggsae | 53.50 | 1 | Hypothetical protein CBG19635 |
| 22 | Kluyveromyces lactis | 50.40 | 1 | unnamed protein product |
| 23 | Debaryomyces hansenii CBS767 | 48.50 | 1 | hypothetical protein DEHA0F20548g |
| 24 | Pichia stipitis CBS 6054 | 46.20 | 1 | predicted protein |
| 25 | Candida glabrata | 45.10 | 1 | unnamed protein product |
| 26 | Phaeosphaeria nodorum SN15 | 43.50 | 1 | hypothetical protein SNOG_15084 |
| 27 | Ashbya gossypii ATCC 10895 | 42.70 | 1 | ABL112Wp |
| 28 | Lodderomyces elongisporus NRRL YB-4239 | 40.80 | 1 | coatomer beta subunit |
| 29 | Chaetomium globosum CBS 148.51 | 40.80 | 1 | conserved hypothetical protein |
| 30 | Aspergillus terreus NIH2624 | 40.40 | 1 | coatomer beta subunit |
| 31 | Aspergillus nidulans FGSC A4 | 40.00 | 1 | hypothetical protein AN1177.2 |
| 32 | Pichia guilliermondii ATCC 6260 | 39.70 | 1 | hypothetical protein PGUG_00251 |
| 33 | Neurospora crassa OR74A | 39.70 | 1 | hypothetical protein |
| 34 | Aspergillus oryzae | 39.30 | 1 | unnamed protein product |
| 35 | Aspergillus niger | 39.30 | 1 | hypothetical protein An08g03270 |
| 36 | Aspergillus fumigatus Af293 | 39.30 | 1 | Coatomer subunit beta, putative |
| 37 | Aspergillus clavatus NRRL 1 | 39.30 | 1 | Coatomer subunit beta, putative |
| 38 | Neosartorya fischeri NRRL 181 | 39.30 | 1 | Coatomer subunit beta, putative |
| 39 | Magnaporthe grisea 70-15 | 38.90 | 1 | conserved hypothetical protein |
| 40 | Candida albicans SC5314 | 38.50 | 1 | hypothetical protein CaO19_8161 |
| 41 | Gibberella zeae PH-1 | 38.10 | 1 | conserved hypothetical protein |
| 42 | Schizosaccharomyces pombe 972h- | 37.70 | 1 | coatomer subunit beta |
| 43 | Cryptococcus neoformans var. neoformans JEC21 | 37.00 | 1 | ER to Golgi transport-related protein |
| 44 | Coprinopsis cinerea okayama7#130 | 36.60 | 1 | hypothetical protein CC1G_00705 |
| 45 | Ustilago maydis 521 | 36.20 | 1 | hypothetical protein UM03361.1 |
| 46 | Yarrowia lipolytica | 36.20 | 1 | hypothetical protein |
| 47 | Coccidioides immitis RS | 35.00 | 1 | hypothetical protein CIMG_06935 |
| 48 | Arabidopsis thaliana | 34.70 | 3 | coatomer beta subunit, putative / beta-coat protei |
| 49 | Ostreococcus lucimarinus CCE9901 | 34.70 | 1 | predicted protein |
| 50 | Ostreococcus tauri | 34.30 | 1 | coatomer subunit beta (ISS) |
| 51 | Oryza sativa (japonica cultivar-group) | 33.10 | 6 | Os01g0281400 |
| 52 | Oryza sativa (indica cultivar-group) | 33.10 | 2 | hypothetical protein OsI_001379 |
Top-ranked sequences
| organism | matching |
|---|---|
| Mus musculus | Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 |
| Pan troglodytes | Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 |
| Homo sapiens | Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 |
| Pongo pygmaeus | Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 |
| Rattus norvegicus | Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 ||||||||||||||||||||||||||||||#|||||||||||||||||||||||||||||| Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 |
| Gallus gallus | Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 |||||||+||||||||||||||||||||||#|||||||||||||||||||||||||||||| Sbjct 499 ELKPEEEVTVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 558 |
| Bos taurus | Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 ||||||||||||||||||||||||||||||#|||||||||+|||||||||||||||||||| Sbjct 499 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEERPPLRGFLLDGDFFVAASLA 558 |
| Canis familiaris | Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 ||||||||||||||||||||||||||||||#|||||||||+|||||||||||||||||||| Sbjct 600 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEERPPLRGFLLDGDFFVAASLA 659 |
| Monodelphis domestica | Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 |||||||| |||||||||||||||||||||#||||||||||||||| |||||||||||||| Sbjct 499 ELKPEEEINVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRAFLLDGDFFVAASLA 558 |
| Xenopus laevis | Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 |||||+++|||| |||||||||||||||||#|||| ||||+|||||||||||||+|||||| Sbjct 499 ELKPEDDVTVGPAQKLVTEMGTYATQSALS#SSRPAKKEEERPPLRGFLLDGDFYVAASLA 558 |
| Danio rerio | Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 |+|||||+| | ||||||||| ||||||#+|||+|||||||||||||+||||+|||||| Sbjct 499 EVKPEEEVTAAPAPKLVTEMGTYVTQSALS#TSRPSKKEEDRPPLRGFLMDGDFYVAASLA 558 |
| Tetraodon nigroviridis | Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 |+|||+|++ | |||||||||| ||||||#||||+|||||||||||||+||||+||| || Sbjct 525 EVKPEDEVSAAPAQKLVTEMGTYVTQSALS#SSRPSKKEEDRPPLRGFLMDGDFYVAACLA 584 |
| Strongylocentrotus purpuratus | Query 494 LKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 | ||+ | ++|||||||||||||||# ||+|| || |||||+|||||| | || Sbjct 276 LTPEK---VSASKRLVTEMGTYATQSALS#VVS-TKQEEQRPALRGFLMDGDFFVGACLA 330 |
| Caenorhabditis elegans | Query 493 ELKPEEEITVGPVQKL-----VTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFV 547 | ||||+ | |+ || ||||||+|||#|+ | |+ ++|||| |||||+||+ Sbjct 497 EQKPEEQ---QPEQQQKQKPKVTADGTYATQTALS#STVTTSKKNEKPPLRRFLLDGEFFL 553 Query 548 AASLA 552 |||| Sbjct 554 GASLA 558 |
| Apis mellifera | Query 502 VGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 | | | ||| |||||||| |#++ |||| || | ++++||||+ |||| Sbjct 500 VTPAQ-LVTSDGTYATQSAFS#ATSARKKEEKRPALVQYMMEGDFFIGASLA 549 |
| Anopheles gambiae str. PEST | Query 499 EITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 | | | || |||||||| |# + | |+ +||||| +++||||||||+|| Sbjct 510 ETTANSTNK-VTSDGTYATQSAFS#VA-PVAKKVERPPLRQYMMDGDFFVAATLA 561 |
| Aedes aegypti | Query 509 VTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 || |||||||| |# + | |+ +||||| +|+|||||+ |+|| Sbjct 517 VTSDGTYATQSAFS#VA-PVSKKVERPPLRQYLMDGDFFIGATLA 559 |
| Drosophila melanogaster | Query 503 GPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 | || |||||||| |# + | | | ||||| +|+|||||+ |+|+ Sbjct 522 GNASNKVTSDGTYATQSAYS#LA-PVAKAEKRPPLRQYLMDGDFFIGAALS 570 |
| N/A | Query 503 GPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 | || |||||||| |# | | | ||||| +|+|||||+ |+|+ Sbjct 521 GNASNKVTSDGTYATQSAYS#LP-PVAKAEKRPPLRQYLMDGDFFIGAALS 569 |
| Drosophila pseudoobscura | Query 509 VTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 || |||||||| |# + | | | ||||| +|+|||||+ |+|+ Sbjct 528 VTSDGTYATQSAYS#LA-PVAKVEKRPPLRQYLMDGDFFIGAALS 570 |
| Caenorhabditis briggsae | Query 497 EEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 ++++ || || ||||||+|||#++ +|| | +|||| |||+|+||+ |||| Sbjct 505 QKKVPSGPK---VTADGTYATQTALS#TTVVSKKNE-KPPLRRFLLNGEFFLGASLA 556 |
| Kluyveromyces lactis | Query 500 ITVGPVQKLVTEMGTYATQSALS#SSRPTK-----KEEDRPPLRGFLLDGDFFVAASLA 552 ++ ||| | |||||+||||# | | ++| ||||| |+|+|||| |+ || Sbjct 510 VSTGPV---VLPDGTYATESALS#VSEKVKSTSNEEKEARPPLRRFVLNGDFFTASVLA 564 |
| Debaryomyces hansenii CBS767 | Query 497 EEEITVGPVQK-----LVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASL 551 +|+ | | |+| +| |||||++||+#+ | +|++||+| +|+|||++ + | Sbjct 498 DEDETNGSVEKPKKRPVVLPDGTYATENALT#TEIKTSVDEEKPPIRRLILEGDFYLGSVL 557 Query 552 A 552 | Query 552 A 552 |
| Pichia stipitis CBS 6054 | Query 498 EEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 | ||| | |||||+|||+#+ +++||+| +|||||++|| |+ Sbjct 506 EHTKKGPV---VLPDGTYATESALT#AEVKDTSNDEKPPVRKHILDGDFYLAAVLS 557 |
| Candida glabrata | Query 497 EEEIT--VGPVQKLVTEMGTYATQSALS#SSRPTKKE-----EDRPPLRGFLLDGDFFVAA 549 || | ||| + |||||++| #|| |+ |+||||| |+| |||+ |+ Sbjct 509 EESATKQAGPV---ILPDGTYATENAFG#SSNNDNKKKLVENENRPPLRRFVLGGDFYTAS 565 Query 550 SLA 552 || Sbjct 566 ILA 568 |
| Phaeosphaeria nodorum SN15 | Query 513 GTYATQSALS#SSRPTK------KEEDRPPLRGFLLDGDFFVAASLA 552 |||||+|||+#|| | | +|||| +||||+++| |+ Sbjct 525 GTYATESALT#SSAAAKAKLEAVKNSQKPPLRQLVLDGDYYLATVLS 570 |
| Ashbya gossypii ATCC 10895 | Query 496 PEEEITVGPVQKLVTEMGTYATQSAL---S#SSRPTKKEED-RPPLRGFLLDGDFFVAASL 551 ||+ + || | ||| |+||| |#+ + +|+++| ||||| |+| | |+ + | Sbjct 507 PEDNVPKGPT---VLPDGTYVTESALTVQS#TKQLSKEDKDSRPPLRRFILSGYFYAGSVL 563 Query 552 A 552 | Query 552 A 552 |
| Lodderomyces elongisporus NRRL YB-4239 | Query 513 GTYATQSALS#S-SRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 |||||++| |#| | ++ | +|||| || |||++ | |+ Sbjct 178 GTYATETAFS#SESYESQDSESKPPLRKHLLAGDFYLGAVLS 218 |
| Chaetomium globosum CBS 148.51 | Query 501 TVGPVQKLVTEMGTYATQSALS#SSRPTK------KEEDRPPLRGFLLDGDFFVAASLA 552 | | +|++ + |||||++||+#| | +|||| +||||+++| || Sbjct 515 TPGGSRKVLAD-GTYATETALT#SQSAAAARLEAVKASSKPPLRQLILDGDYYLATVLA 571 |
| Aspergillus terreus NIH2624 | Query 513 GTYATQSALS#SSRPTK------KEEDRPPLRGFLLDGDFFVAASLA 552 |||||+|||+#| | +|||| +|||||++| |+ Sbjct 525 GTYATESALT#SESAAAARLAAVKAAQKPPLRQLILDGDFYLATVLS 570 |
| Aspergillus nidulans FGSC A4 | Query 496 PEEEITV-GPVQKLVTEMGTYATQSALS#SSRPTK------KEEDRPPLRGFLLDGDFFVA 548 |+|+| | | |||||+|||+#| | +|||| +||||+++| Sbjct 502 PKEQINGHGKSAPKVLADGTYATESALT#SQSAAAARLQAVKAAQKPPLRQLILDGDYYLA 561 Query 549 ASLA 552 |+ Sbjct 562 TVLS 565 |
| Pichia guilliermondii ATCC 6260 | Query 497 EEEITVGPVQK--LVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVA 548 +|| + | + | +| |||||++|++# +||++||+| || |||++| Sbjct 550 QEEESSGKLTKKPVVLPDGTYATENAMT#VD-VVHQEEEKPPVRKLLLGGDFYLA 602 |
| Neurospora crassa OR74A | Query 513 GTYATQSALS#SSRPTK------KEEDRPPLRGFLLDGDFFVAASLA 552 |||||++||+#| | +|||| +||||+++| || Sbjct 524 GTYATETALT#SQSTAAARLEAVKASSKPPLRQLILDGDYYLATVLA 569 |
| Aspergillus oryzae | Query 513 GTYATQSALS#SSRPTK------KEEDRPPLRGFLLDGDFFVAASLA 552 |||||+|||+#| | +|||| +||||+++| |+ Sbjct 525 GTYATESALT#SQSAAAARLEAVKAAQKPPLRQLILDGDYYLATVLS 570 |
| Aspergillus niger | Query 513 GTYATQSALS#SSRPTK------KEEDRPPLRGFLLDGDFFVAASLA 552 |||||+|||+#| | +|||| +||||+++| |+ Sbjct 525 GTYATESALT#SQSAAAARLEAVKAAQKPPLRQLILDGDYYLATVLS 570 |
| Aspergillus fumigatus Af293 | Query 513 GTYATQSALS#SSRPTK------KEEDRPPLRGFLLDGDFFVAASLA 552 |||||+|||+#| | +|||| +||||+++| |+ Sbjct 525 GTYATESALT#SESAAAARLEAVKAAQKPPLRQLILDGDYYLATVLS 570 |
| Aspergillus clavatus NRRL 1 | Query 513 GTYATQSALS#SSRPTK------KEEDRPPLRGFLLDGDFFVAASLA 552 |||||+|||+#| | +|||| +||||+++| |+ Sbjct 525 GTYATESALT#SESAAAAKLAAVKAAQKPPLRQLILDGDYYLATVLS 570 |
| Neosartorya fischeri NRRL 181 | Query 513 GTYATQSALS#SSRPTK------KEEDRPPLRGFLLDGDFFVAASLA 552 |||||+|||+#| | +|||| +||||+++| |+ Sbjct 525 GTYATESALT#SESAAAARLEAVKAAQKPPLRQLILDGDYYLATVLS 570 |
| Magnaporthe grisea 70-15 | Query 513 GTYATQSALS#S--SRPTK----KEEDRPPLRGFLLDGDFFVAASLA 552 |||||++||+#| |+ | | +|||| +||||+++| |+ Sbjct 525 GTYATETALT#SQSSKAAKLEAVKAAQKPPLRQLILDGDYYLATVLS 570 |
| Candida albicans SC5314 | Query 503 GPVQKLVTEMGTYATQSALS#SSRPTKKEED-RPPLRGFLLDGDFFVAASLA 552 ||| | |||||+|||+#| | | + |+| +| |||++ | || Sbjct 513 GPV---VLPDGTYATESALT#SETTDSLESDSKTPIRKQILAGDFYLGAVLA 560 |
| Gibberella zeae PH-1 | Query 513 GTYATQSALS#SSRPTK------KEEDRPPLRGFLLDGDFFVAASLA 552 |||||++||+#| | +|||| +||||+++| |+ Sbjct 525 GTYATETALT#SQSSAAARLEAVKTAQKPPLRQLILDGDYYLATVLS 570 |
| Schizosaccharomyces pombe 972h- | Query 496 PEEEITV-----GPVQKLVTEMGTYATQSALS#SSRPTK------KEEDRPPLRGFLLDGD 544 ||+++ + + | |||||+||++#| + | +|||| +| || Sbjct 495 PEDDLLIDISAPASTSRKVLPDGTYATESAVT#SEALSAARLEAVKASKKPPLRTQILSGD 554 Query 545 FFVAASLA 552 +++|| || Sbjct 555 YYLAAVLA 562 |
| Cryptococcus neoformans var. neoformans JEC21 | Query 513 GTYATQSALS#SSRPTKKEE-----DRPPLRGFLLDGDFFVAASLA 552 |||||++ +#|| + | +|||| +| |||| + || Sbjct 520 GTYATETVYT#SSASAARLEAVRSASKPPLRSLILGGDFFTGSVLA 564 |
| Coprinopsis cinerea okayama7#130 | Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEED-----RPPLRGFLLDGDFFV 547 | |+| + | |||||++| |#+| + | +|||| +| |||| Sbjct 446 EESEEKEKPAVSTRPRVLADGTYATETAFS#TSSANARLEAVKAAAKPPLRTLILGGDFFT 505 Query 548 AASLA 552 + |+ Sbjct 506 GSVLS 510 |
| Ustilago maydis 521 | Query 513 GTYATQSALS#SSR------PTKKEEDRPPLRGFLLDGDFFVAASLA 552 |||||++| |#| | +|||| || |||+ + || Sbjct 537 GTYATETAFS#SETNQAARLEAVKNASKPPLRSLLLLGDFYTGSVLA 582 |
| Yarrowia lipolytica | Query 497 EEEITVG------PVQKLVTEMGTYATQSALS#SSRPTKKEE-DRPPLRGFLL-DGDFFVA 548 ||| || | +|++ + |||||+|||+#++ + +| + ||| +| ||++||| Sbjct 498 EEEPDVGETATHKPSRKVLAD-GTYATESALT#TTVKAEVDEFEGQPLRSIILKDGNYFVA 556 Query 549 ASL 551 | Sbjct 557 GVL 559 |
| Coccidioides immitis RS | Query 513 GTYATQSALS#SSRPTK------KEEDRPPLRGFLLDGDFFVAASLA 552 |||| ++||+#| | +|||| +||||+++| |+ Sbjct 523 GTYAQETALT#SQSAAAAKLEAIKAARKPPLRQLILDGDYYLATVLS 568 |
| Arabidopsis thaliana | Query 493 ELKPEEEITVGPVQKLVTEMGTYATQSALS#S---SRPTKKEEDRPP--LRGFLLDGDFFV 547 +++| | + ++ |||||||| |# | || + || || ||||+ Sbjct 498 KIQPTSSAMVSSRKPVILADGTYATQSAAS#ETTFSSPTVVQGSLTSGNLRALLLTGDFFL 557 Query 548 AASLA 552 | +| Sbjct 558 GAVVA 562 |
| Ostreococcus lucimarinus CCE9901 | Query 497 EEEITVGPVQKLVTEMGTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 +|+ | + | ||||||+| |#+| + | || || || |++| +| Sbjct 499 DEDTTETTTRPAVLADGTYATQAAYS#TSAAISQV---PNLREMLLKGDSFLSAVIA 551 |
| Ostreococcus tauri | Query 513 GTYATQSALS#SSRPTKKEEDRPPLRGFLLDGDFFVAASLA 552 ||||||+| +#+|+ | || || ||||+|+ +| Sbjct 507 GTYATQAAFT#ASKAIPV---LPNLRELLLKGDFFLASVIA 543 |
| Oryza sativa (japonica cultivar-group) | Query 500 ITVGPVQKLVTEMGTYATQSALS#SSRPTKKE-----EDRPPLRGFLLDGDFFVAASLA 552 +|| + +| |||||||| +# + | || +| ||||+|| ++ Sbjct 507 VTVSSRRPVVLADGTYATQSAAT#EAISTPSVAPGSLSSTLNLRSLILSGDFFLAAVIS 564 |
| Oryza sativa (indica cultivar-group) | Query 500 ITVGPVQKLVTEMGTYATQSALS#SSRPTKKE-----EDRPPLRGFLLDGDFFVAASLA 552 +|| + +| |||||||| +# + | || +| ||||+|| ++ Sbjct 507 VTVSSRRPVVLADGTYATQSAAT#EAISTPSVAPGSLSSTLNLRSLILSGDFFLAAVIS 564 |
* References
[PubMed ID: 15632090] Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P, Sutton G, Gene and alternative splicing annotation with AIR. Genome Res. 2005 Jan;15(1):54-66.