XSB2993 : vimentin variant 4 [Homo sapiens]
[ CaMP Format ]
This entry is computationally expanded from SB0037
* Basic Information
| Organism | Homo sapiens (human) |
| Protein Names | vimentin variant 4 |
| Gene Names | VIM |
| Gene Locus | Not available |
| GO Function | Not available |
| Entrez Protein | Entrez Nucleotide | Entrez Gene | UniProt | OMIM | HGNC | HPRD | KEGG |
|---|---|---|---|---|---|---|---|
| ACA06100 | N/A | N/A | B0YJC5_HUMAN | N/A | N/A | N/A | hsa: |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 228 aa
Average Mass: 26.859 kDa
Monoisotopic Mass: 26.842 kDa
2. Domain Information
Annotated Domains: interpro / pfam / smart / prosite
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
|---|---|---|---|---|
| Filament 1. | 1 | 228 | 330.0 | 4.7e-96 |
| --- cleavage 82 (inside Filament 1..228) --- | ||||
3. Sequence Information
Fasta Sequence: XSB2993.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
1 [sites]
Cleavage sites (±10aa)
[Site 1] QIDVDVSKPD82-LTAALRDVRQ
Asp82 
Leu
 |
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Gln73 | Ile74 | Asp75 | Val76 | Asp77 | Val78 | Ser79 | Lys80 | Pro81 | Asp82 |
 |
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Leu83 | Thr84 | Ala85 | Ala86 | Leu87 | Arg88 | Asp89 | Val90 | Arg91 | Gln92 |
Sequence conservation (by blast)
Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| KKLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSK |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | Homo sapiens | 83.60 | 46 | unnamed protein product |
| 2 | Mus musculus | 83.60 | 28 | unnamed protein product |
| 3 | N/A | 83.60 | 22 | - |
| 4 | Rattus norvegicus | 83.60 | 11 | vimentin |
| 5 | Macaca mulatta | 83.60 | 10 | PREDICTED: vimentin |
| 6 | Pan troglodytes | 83.60 | 8 | vimentin |
| 7 | Macaca fascicularis | 83.60 | 4 | VIME_MACFA Vimentin sp |
| 8 | synthetic construct | 83.60 | 3 | vimentin |
| 9 | Cricetulus griseus | 83.60 | 1 | vimentin |
| 10 | Pan troglodytes verus | 83.60 | 1 | vimentin |
| 11 | Canis familiaris | 82.40 | 20 | PREDICTED: similar to Vimentin isoform 5 |
| 12 | Bos taurus | 82.40 | 8 | vimentin |
| 13 | Bubalus bubalis | 82.40 | 1 | vimentin |
| 14 | Sus scrofa domestica | 82.40 | 1 | vimentin |
| 15 | Monodelphis domestica | 82.00 | 6 | PREDICTED: similar to vimentin |
| 16 | Gallus gallus | 82.00 | 4 | vimentin |
| 17 | Ovis aries | 80.90 | 2 | vimentin |
| 18 | Daboia russellii | 79.30 | 1 | AF447708_1 vimentin |
| 19 | Xenopus laevis | 77.40 | 15 | Vim1 protein |
| 20 | Bos grunniens | 77.00 | 1 | vimentin |
| 21 | Xenopus tropicalis | 76.30 | 5 | Unknown (protein for IMAGE:7605834) |
| 22 | Cyprinus carpio | 72.80 | 3 | VIME_CYPCA Vimentin gb |
| 23 | Sus scrofa | 72.40 | 3 | desmin |
| 24 | Canis lupus familiaris | 72.40 | 1 | desmin |
| 25 | Mesocricetus auratus | 72.40 | 1 | DESM_MESAU Desmin gb |
| 26 | Scyliorhinus stellaris | 72.00 | 1 | desmin |
| 27 | Acipenser baerii | 71.60 | 2 | desmin |
| 28 | Takifugu rubripes | 71.20 | 1 | TPA: desmin |
| 29 | Danio rerio | 70.50 | 18 | vimentin |
| 30 | Oncorhynchus mykiss | 70.50 | 2 | VIME_ONCMY Vimentin emb |
| 31 | Tetraodon nigroviridis | 70.10 | 6 | unnamed protein product |
| 32 | Protopterus aethiopicus | 68.60 | 2 | type III desmin |
| 33 | Oreochromis mossambicus | 66.20 | 1 | glial fibrillary acidic protein |
| 34 | Equus caballus | 63.90 | 1 | glial fibrillary acidic protein |
| 35 | Capreolus capreolus | 63.90 | 1 | glial fibrillary acidic protein |
| 36 | Lampetra fluviatilis | 63.90 | 1 | intermediate filament protein |
| 37 | Dama dama | 63.90 | 1 | glial fibrillary acidic protein |
| 38 | Pongo pygmaeus | 63.50 | 5 | hypothetical protein |
| 39 | Petromyzon marinus | 60.50 | 1 | neurofilament subunit NF-L |
Top-ranked sequences
| organism | matching |
|---|---|
| Homo sapiens | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |||||||||||#|||||||||||||||||||||||||||||| Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |
| Mus musculus | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |||||||||||#|||||||||||||||||||||||||||||| Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |
| N/A | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |||||||||||#|||||||||||||||||||||||||||||| Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |
| Rattus norvegicus | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |||||||||||#|||||||||||||||||||||||||||||| Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |
| Macaca mulatta | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |||||||||||#|||||||||||||||||||||||||||||| Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |
| Pan troglodytes | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |||||||||||#|||||||||||||||||||||||||||||| Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |
| Macaca fascicularis | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |||||||||||#|||||||||||||||||||||||||||||| Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |
| synthetic construct | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |||||||||||#|||||||||||||||||||||||||||||| Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |
| Cricetulus griseus | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |||||||||||#|||||||||||||||||||||||||||||| Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |
| Pan troglodytes verus | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |||||||||||#|||||||||||||||||||||||||||||| Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |
| Canis familiaris | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 ||||+||||||#|||||||||||||||||||||||||||||| Sbjct 254 VQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Bos taurus | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 ||||+||||||#|||||||||||||||||||||||||||||| Sbjct 254 VQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Bubalus bubalis | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 ||||+||||||#|||||||||||||||||||||||||||||| Sbjct 59 VQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 99 |
| Sus scrofa domestica | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 ||||+||||||#|||||||||||||||||||||||||||||| Sbjct 124 VQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 164 |
| Monodelphis domestica | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 +||||||+|||#|||||||||||||||||||||||||||||| Sbjct 255 IQIDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 |
| Gallus gallus | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 +|||+||||||#|||||||||||||||||||||||||||||| Sbjct 46 IQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 86 |
| Ovis aries | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 ||||+|||+||#|||||||||||||||||||||||||||||| Sbjct 254 VQIDMDVSQPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Daboia russellii | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 +|||+||+|||#|||||||||||||||| ||||||||||||| Sbjct 249 IQIDMDVAKPD#LTAALRDVRQQYESVATKNLQEAEEWYKSK 289 |
| Xenopus laevis | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 +|+|+||||||#|||||||||||||+|||||| +|||||||| Sbjct 61 IQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEEWYKSK 101 |
| Bos grunniens | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 109 ||||+||||||#||||||||||||||||||||||||||| Sbjct 67 VQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 104 |
| Xenopus tropicalis | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 +|+|+||||||#|||||||||||||+|||||| +||+||||| Sbjct 273 IQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEDWYKSK 313 |
| Cyprinus carpio | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 ||||++|+|||#|||||+|||||||++|++||||+||||||| Sbjct 245 VQIDMEVAKPD#LTAALKDVRQQYETLASRNLQESEEWYKSK 285 |
| Sus scrofa | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 ||+++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 251 VQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 291 |
| Canis lupus familiaris | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 ||+++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 258 VQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Mesocricetus auratus | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 ||+++|+||||#|||||||+| |||++||||+ ||||||||| Sbjct 258 VQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Scyliorhinus stellaris | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 ||+++|+||||#|||||||+| ||| ++|||+|||||||||| Sbjct 243 VQVEMDLSKPD#LTAALRDIRAQYECISAKNVQEAEEWYKSK 283 |
| Acipenser baerii | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 ||+++|+||||#| |||+|+| |||++||||+|||||||||| Sbjct 248 VQVEMDMSKPD#LAAALKDIRSQYENIAAKNIQEAEEWYKSK 288 |
| Takifugu rubripes | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 ||| +|+||||#|||||||+| ||| +||||+ ||||||||| Sbjct 234 VQIQMDMSKPD#LTAALRDIRVQYEGIAAKNISEAEEWYKSK 274 |
| Danio rerio | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 +|||++|+|||#|||||+|||||||++|++||||+|+||||| Sbjct 245 LQIDMEVTKPD#LTAALKDVRQQYETLASRNLQESEDWYKSK 285 |
| Oncorhynchus mykiss | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 ||||+||+|||#||||||||| |||++|++|||++|+||||| Sbjct 250 VQIDMDVAKPD#LTAALRDVRVQYETLASRNLQDSEDWYKSK 290 |
| Tetraodon nigroviridis | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 | +|+||||||#|||||||+| ||||||+ |+|| ||||+|| Sbjct 66 VHVDLDVSKPD#LTAALRDIRIQYESVASSNMQETEEWYRSK 106 |
| Protopterus aethiopicus | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 + +++|+||||#|||||||+| ||||+||||+ +||||||+| Sbjct 243 IHVEMDMSKPD#LTAALRDIRAQYESIAAKNIADAEEWYKTK 283 |
| Oreochromis mossambicus | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKS 111 | +|+||||||#|||||||+| |||++|+ |+|| ||||+| Sbjct 140 VHVDLDVSKPD#LTAALRDIRVQYENMASSNMQETEEWYRS 179 |
| Equus caballus | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 | +++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 64 VHVELDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Capreolus capreolus | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 | +++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 64 VHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Lampetra fluviatilis | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 | ++|| |||#| ||||||| ||||+|+ |||||| |+||| Sbjct 151 VTVEVDTVKPD#LAAALRDVRAQYESIASSNLQEAETWFKSK 191 |
| Dama dama | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 | +++||+|||#||||||++| |||++|+ |+ ||||||+|| Sbjct 64 VHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Pongo pygmaeus | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 + +++||+|||#|+|||+|+| ||| +||||+| ||||+||+ Sbjct 243 ISVEMDVTKPD#LSAALKDIRAQYEKLAAKNMQNAEEWFKSR 283 |
| Petromyzon marinus | Query 72 VQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 + +++ |++||#||+||||+| ||| +||||+| ||||+|+| Sbjct 249 ITVEMSVARPD#LTSALRDIRAQYEVLAAKNMQSAEEWFKTK 289 |
* References
None.