XSB2994 : PREDICTED: similar to Vimentin, partial [Ornithorhynchus anatinus]
[ CaMP Format ]
This entry is computationally expanded from SB0037
* Basic Information
| Organism | Ornithorhynchus anatinus (platypus) |
| Protein Names | similar to Vimentin |
| Gene Names | LOC100092512; Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 68 ESTs, 38 Proteins |
| Gene Locus | Not available |
| GO Function | Not available |
| Entrez Protein | Entrez Nucleotide | Entrez Gene | UniProt | OMIM | HGNC | HPRD | KEGG |
|---|---|---|---|---|---|---|---|
| XP_001521102 | XM_001521052 | 100092512 | N/A | N/A | N/A | N/A | N/A |
* Information From OMIM
Not Available.
* Structure Information
1. Primary Information
Length: 278 aa
Average Mass: 32.416 kDa
Monoisotopic Mass: 32.396 kDa
2. Domain Information
Annotated Domains: Not Available.
Computationally Assigned Domains (Pfam+HMMER):
| domain name | begin | end | score | e-value |
|---|---|---|---|---|
| Filament 1. | 1 | 222 | 311.8 | 1.4e-90 |
| --- cleavage 76 (inside Filament 1..222) --- | ||||
3. Sequence Information
Fasta Sequence: XSB2994.fasta
Amino Acid Sequence and Secondary Structures (PsiPred):
4. 3D Information
Not Available.
* Cleavage Information
1 [sites]
Cleavage sites (±10aa)
[Site 1] QIDVDVAKPD76-LTAALRDVRQ
Asp76 
Leu
 |
|||||||||
| P10 | P9 | P8 | P7 | P6 | P5 | P4 | P3 | P2 | P1 |
|---|---|---|---|---|---|---|---|---|---|
| Gln67 | Ile68 | Asp69 | Val70 | Asp71 | Val72 | Ala73 | Lys74 | Pro75 | Asp76 |
 |
|||||||||
| P1' | P2' | P3' | P4' | P5' | P6' | P7' | P8' | P9' | P10' |
| Leu77 | Thr78 | Ala79 | Ala80 | Leu81 | Arg82 | Asp83 | Val84 | Arg85 | Gln86 |
Sequence conservation (by blast)
Sequence conservation (by blast)
| Reference peptide (cleaved bond±30 residues) |
|---|
| KKLHDEEIQELQAQIQEQHIQIDVDVAKPDLTAALRDVRQQYENVAAKNLHEAEEWYKSK |
Summary
| # | organism | max score | hits | top seq |
|---|---|---|---|---|
| 1 | Monodelphis domestica | 79.70 | 6 | PREDICTED: similar to vimentin |
| 2 | Mus musculus | 78.60 | 28 | unnamed protein product |
| 3 | N/A | 78.60 | 21 | V |
| 4 | Rattus norvegicus | 78.60 | 11 | vimentin |
| 5 | Cricetulus griseus | 78.60 | 1 | vimentin |
| 6 | Xenopus laevis | 77.80 | 15 | Vim1 protein |
| 7 | Canis familiaris | 77.40 | 19 | PREDICTED: similar to Vimentin isoform 5 |
| 8 | Bos taurus | 77.40 | 8 | vimentin |
| 9 | Gallus gallus | 77.40 | 5 | vimentin |
| 10 | Bubalus bubalis | 77.40 | 1 | vimentin |
| 11 | Sus scrofa domestica | 77.40 | 1 | vimentin |
| 12 | Homo sapiens | 77.00 | 46 | unnamed protein product |
| 13 | Macaca mulatta | 77.00 | 10 | PREDICTED: vimentin |
| 14 | Pan troglodytes | 77.00 | 8 | vimentin |
| 15 | Macaca fascicularis | 77.00 | 4 | unnamed protein product |
| 16 | synthetic construct | 77.00 | 3 | vimentin |
| 17 | Pan troglodytes verus | 77.00 | 1 | vimentin |
| 18 | Xenopus tropicalis | 76.60 | 5 | Unknown (protein for IMAGE:7605834) |
| 19 | Ovis aries | 75.90 | 2 | vimentin |
| 20 | Daboia russellii | 75.50 | 1 | AF447708_1 vimentin |
| 21 | Bos grunniens | 72.00 | 1 | vimentin |
| 22 | Acipenser baerii | 70.90 | 2 | vimentin |
| 23 | Cyprinus carpio | 70.90 | 2 | VIME_CYPCA Vimentin gb |
| 24 | Danio rerio | 68.20 | 17 | vimentin |
| 25 | Sus scrofa | 67.40 | 3 | desmin |
| 26 | Oncorhynchus mykiss | 67.40 | 2 | VIME_ONCMY Vimentin emb |
| 27 | Canis lupus familiaris | 67.40 | 1 | desmin |
| 28 | Mesocricetus auratus | 67.40 | 1 | DESM_MESAU Desmin gb |
| 29 | Tetraodon nigroviridis | 66.60 | 7 | unnamed protein product |
| 30 | Takifugu rubripes | 66.60 | 1 | TPA: desmin |
| 31 | Scyliorhinus stellaris | 65.10 | 2 | desmin |
| 32 | Capreolus capreolus | 65.10 | 1 | glial fibrillary acidic protein |
| 33 | Equus caballus | 65.10 | 1 | glial fibrillary acidic protein |
| 34 | Dama dama | 65.10 | 1 | glial fibrillary acidic protein |
| 35 | Oreochromis mossambicus | 64.30 | 1 | glial fibrillary acidic protein |
| 36 | Protopterus aethiopicus | 63.50 | 2 | type III desmin |
| 37 | Pongo pygmaeus | 62.80 | 5 | hypothetical protein |
| 38 | Lampetra fluviatilis | 61.60 | 2 | intermediate filament protein |
| 39 | Petromyzon marinus | 57.40 | 1 | neurofilament subunit NF-L |
Top-ranked sequences
| organism | matching |
|---|---|
| Monodelphis domestica | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| ||||||||#|||||||||||||+|||||| ||||||||| Sbjct 236 KKLHDEEIQELQAQIQEQHIQIDVDVAKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 295 |
| Mus musculus | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| ||||+|||#|||||||||||||+|||||| ||||||||| Sbjct 174 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 233 |
| N/A | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| ||||+|||#|||||||||||||+|||||| ||||||||| Sbjct 217 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 276 |
| Rattus norvegicus | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| ||||+|||#|||||||||||||+|||||| ||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Cricetulus griseus | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| ||||+|||#|||||||||||||+|||||| ||||||||| Sbjct 149 KKLHDEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 208 |
| Xenopus laevis | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| |+||+|||#|||||||||||||||||||| +|||||||| Sbjct 42 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEEWYKSK 101 |
| Canis familiaris | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| |+||+|||#|||||||||||||+|||||| ||||||||| Sbjct 235 KKLHDEEIQELQAQIQDQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Bos taurus | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| |+||+|||#|||||||||||||+|||||| ||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Gallus gallus | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| |+||+|||#|||||||||||||+|||||| ||||||||| Sbjct 27 KKLHDEEIRELQAQLQEQHIQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 86 |
| Bubalus bubalis | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| |+||+|||#|||||||||||||+|||||| ||||||||| Sbjct 40 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 99 |
| Sus scrofa domestica | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| |+||+|||#|||||||||||||+|||||| ||||||||| Sbjct 105 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 164 |
| Homo sapiens | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||+ ||||+|||#|||||||||||||+|||||| ||||||||| Sbjct 53 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 112 |
| Macaca mulatta | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||+ ||||+|||#|||||||||||||+|||||| ||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Pan troglodytes | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||+ ||||+|||#|||||||||||||+|||||| ||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Macaca fascicularis | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||+ ||||+|||#|||||||||||||+|||||| ||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| synthetic construct | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||+ ||||+|||#|||||||||||||+|||||| ||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Pan troglodytes verus | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||+ ||||+|||#|||||||||||||+|||||| ||||||||| Sbjct 235 KKLHEEEIQELQAQIQEQHVQIDVDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Xenopus tropicalis | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| |+||+|||#|||||||||||||||||||| +||+||||| Sbjct 254 KKLHDEEIRELQLQIQESHIQVDMDVSKPD#LTAALRDVRQQYENVAAKNLSDAEDWYKSK 313 |
| Ovis aries | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| |+||++||#|||||||||||||+|||||| ||||||||| Sbjct 235 KKLHDEEIQELQAQIQEQHVQIDMDVSQPD#LTAALRDVRQQYESVAAKNLQEAEEWYKSK 294 |
| Daboia russellii | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||+ |+||||||#|||||||||||||+|| ||| ||||||||| Sbjct 230 KKLHEEEIRELQAQIQDQHIQIDMDVAKPD#LTAALRDVRQQYESVATKNLQEAEEWYKSK 289 |
| Bos grunniens | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWY 103 ||||| |+||+|||#|||||||||||||+|||||| |||||| Sbjct 48 KKLHDEEIQELQAQIQEQHVQIDMDVSKPD#LTAALRDVRQQYESVAAKNLQEAEEWY 104 |
| Acipenser baerii | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 +|||| |+||||||#||||||||| ||||+|+||+ |+|+||||| Sbjct 225 RKLHDEELAELQVQIQEQHIQIDMDVAKPD#LTAALRDVRLQYENLASKNMSESEDWYKSK 284 |
| Cyprinus carpio | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| |++|||||#|||||+||||||| +|++|| |+||||||| Sbjct 226 KKLHDEELAELQIQIQEQHVQIDMEVAKPD#LTAALKDVRQQYETLASRNLQESEEWYKSK 285 |
| Danio rerio | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||||| |++| |||#|||||+||||||| +|++|| |+|+||||| Sbjct 226 KKLHDEELAEMQIQMQEQHLQIDMEVTKPD#LTAALKDVRQQYETLASRNLQESEDWYKSK 285 |
| Sus scrofa | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||+|+ ++|++|||#|||||||+| ||| +||||+ ||||||||| Sbjct 232 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 291 |
| Oncorhynchus mykiss | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 +|||| |+||||||#||||||||| ||| +|++|| ++|+||||| Sbjct 231 RKLHDEEVAELQAQIQDQHVQIDMDVAKPD#LTAALRDVRVQYETLASRNLQDSEDWYKSK 290 |
| Canis lupus familiaris | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||+|+ ++|++|||#|||||||+| ||| +||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Mesocricetus auratus | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||+|+ ++|++|||#|||||||+| ||| +||||+ ||||||||| Sbjct 239 KKVHEEEIRELQAQLQEQQVQVEMDMSKPD#LTAALRDIRAQYETIAAKNISEAEEWYKSK 298 |
| Tetraodon nigroviridis | Query 69 DVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 |+++||||#||||||||| ||||+|+||+ |+||||||| Sbjct 231 DMEMAKPD#LTAALRDVRLQYENLASKNIQESEEWYKSK 268 |
| Takifugu rubripes | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||+|+ +|++|||#|||||||+| ||| +||||+ ||||||||| Sbjct 215 KKIHEEEIRELQSQMQETQVQIQMDMSKPD#LTAALRDIRVQYEGIAAKNISEAEEWYKSK 274 |
| Scyliorhinus stellaris | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ||+|+ ++|++|||#|||||||+| ||| ++|||+ ||||||||| Sbjct 224 KKVHEEELRELQAQLQEQHVQVEMDLSKPD#LTAALRDIRAQYECISAKNVQEAEEWYKSK 283 |
| Capreolus capreolus | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 +|+|+ ++||||||#||||||++| ||| +|+ |+|||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Equus caballus | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 +|+|+ ++||||||#||||||++| ||| +|+ |+|||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVELDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Dama dama | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 +|+|+ ++||||||#||||||++| ||| +|+ |+|||||||+|| Sbjct 45 RKIHEEEVRELQEQLAQQQVHVEMDVAKPD#LTAALREIRTQYEAMASSNMHEAEEWYRSK 104 |
| Oreochromis mossambicus | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKS 105 ||+|+ |+||+|||#|||||||+| ||||+|+ |+ | ||||+| Sbjct 121 KKIHEDELRELQEQIMAQQVHVDLDVSKPD#LTAALRDIRVQYENMASSNMQETEEWYRS 179 |
| Protopterus aethiopicus | Query 69 DVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ++|++|||#|||||||+| |||++||||+ +||||||+| Sbjct 246 EMDMSKPD#LTAALRDIRAQYESIAAKNIADAEEWYKTK 283 |
| Pongo pygmaeus | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 +|+|+ ++|+||||#|||||+++| ||| +|+ |+|||||||+|| Sbjct 201 RKIHEEEVRELQEQLARQQVHVELDMAKPD#LTAALKEIRTQYEAMASSNMHEAEEWYRSK 260 |
| Lampetra fluviatilis | Query 47 KKLHDXXXXXXXXXXXXXXXXXDVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 || || +|| |||#| ||||||| |||++|+ || ||| |+||| Sbjct 132 KKAHDEEVRELQAMMQEQQVTVEVDTVKPD#LAAALRDVRAQYESIASSNLQEAETWFKSK 191 |
| Petromyzon marinus | Query 69 DVDVAKPD#LTAALRDVRQQYENVAAKNLHEAEEWYKSK 106 ++ ||+||#||+||||+| ||| +||||+ ||||+|+| Sbjct 252 EMSVARPD#LTSALRDIRAQYEVLAAKNMQSAEEWFKTK 289 |
* References
None.